Pregled po CROSBI profilu: Mile Šikić (CROSBI Profil: 27663, MBZ: 250972)
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1.Šikić, MileFacilitating genome structural variation analysis // Nature methods, 20 (2023), 491-492 doi:10.1038/s41592-023-01767-5 (međunarodna recenzija, članak, znanstveni)
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2.Šikić, MileAsian Reference Genome Project // International Genome Graph Symposium 2022
Ascona, Švicarska, 2022. (pozvano predavanje, neobjavljeni rad, znanstveni) -
3.Nguyen, Tram Anh; Heng, Jia Wei Joel; Kaewsapsak, Pornchai; Kok, Eng Piew Louis; Stanojević, Dominik; Liu, Hao; Cardilla, Angelysia; Praditya, Albert; Yi, Zirong; Lin, Mingwan et al.Direct identification of A-to-I editing sites with nanopore native RNA sequencing // Nature methods, 19 (2022), 833-844 doi:10.1038/s41592-022-01513-3 (međunarodna recenzija, članak, znanstveni)
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4.Lim, Abner Herbert; Low, Zhen Jie; Shingate, Prashant Narendra; Jing, Han Hong; Chong, Shu Chen; Ng, Cedric Chuan Young; Liu, Wei; Vaser, Robert; Šikić, Mile; Sung, Wing-Kin Ken et al.Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim ‘Agnes’ reveals metabolic pathways regulating floral traits // Communications biology, 5 (2022), 967, 9 (međunarodna recenzija, članak, znanstveni)
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5.Martinović, IvonaCombining protein and RNA structures information in developing new scoring functions, 2022., diplomski rad, diplomski, Zagreb
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6.Šarić, JelenaEvaluation of RNA Atom Distance Prediction Models, 2022., diplomski rad, diplomski, Zagreb
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7.Penić, Rafael JosipDeep learning model of nanopore sequencing pore, 2021., diplomski rad, diplomski, Fakultet elektrotehnike i računarstva, Zagreb
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8.Pratljačić, SuzanaRapid overlapping of Single Molecule High-Fidelity Sequencing Data, 2021., diplomski rad, diplomski, Zagreb
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9.Pavlić, StanislavDNA Nanopore Sequencing Basecaller, 2021., diplomski rad, diplomski, Zagreb
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10.Bakić, SaraRapid Microbe Detection Using Deep Learning, 2021., diplomski rad, diplomski, Zagreb
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11.Deur, SanjaDetection of Modified Nucleotides Using Nanopore Sequencing and Deep Learning Methods, 2021., diplomski rad, diplomski, Zagreb
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12.Penić, Rafael JosipDeep Learning Model of Nanopore Sequencing Pore, 2021., diplomski rad, diplomski, Zargeb
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13.Pavlinec, Željko; Vaser, Robert; Zupičić, Ivana Giovanna; Zrnčić, Snježana; Oraić, Dražen; Šikić, MileWhole genome comparison of Vibrio harveyi strains from the Mediterranean Sea // EAFP 20th International Conference on Diseases of Fish and Shellfish / Mladineo, Ivona (ur.).
Aberdeen (MD): EAFP, 2021. str. 64-64 (predavanje, sažetak, znanstveni) -
14.Vaser, Robert; Šikić, MileTime- and memory-efficient genome assembly with Raven // Nature Computational Science, 1 (2021), 332-336 doi:10.1038/s43588-021-00073-4 (međunarodna recenzija, članak, znanstveni)
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15.Lipovac, JosipaDetection of Modified Nucleotide Clusters in Nanopore Sequenced RNA Reads, 2021., diplomski rad, diplomski, Fakultet elektrotehnike i računarstva, Zagreb
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16.Staver, MauroBrzo poravnanje visoko pouzdanih dugačkih očitanja, 2021., diplomski rad, preddiplomski, Fakultet elektrotehnike i računarstva, Zagreb
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17.Rašić, MarinPoopćenje algoritma za poravnanje parcijalnog uređaja, 2021., diplomski rad, preddiplomski, Fakultet elektrotehnike i računarstva, Zagreb
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18.Klabučar, IvanStruktura podataka za efikasno spremanje očitanja dobivenih sekvenciranjem genoma, 2021., diplomski rad, preddiplomski, Fakultet elektrotehnike i računarstva, Zagreb
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19.Duvnjak, Sanja; Pavlinec, Željko; Vaser, Robert; Križanović, Krešimir; Šikić, Mile; Zdelar-Tuk, Maja; Reil, Irena; Spičić, SilvioEfficacy of next-generation sequencing in bacterial zoonoses diagnostics // Veterinarska stanica, 53 (2021), 1; 1-10 doi:10.46419/vs.53.1.9 (podatak o recenziji nije dostupan, članak, ostalo)
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20.Baksa, MirnaMicrobe Detection Using Deep Learning, 2020., diplomski rad, diplomski, Fakultet elektrotehnike i računarstva, Zagreb
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21.Josip Marić; Sylvain Riondet; Krešimir Križanović; Niranjan Nagarajan; Mile ŠikićBenchmarking metagenomic classification tools for long read sequencing data // 28th International Conference on Intelligent Systems for Molecular Biology (ISMB) 2020
online;, 2020. doi:10.7490/f1000research.1118120.1 (poster, međunarodna recenzija, pp prezentacija, znanstveni) -
22.Vrček, Lovro; Huang, Megan Hong Hui; Vaser, Robert; Šikić, MileDeep learning approach to determining the type of long reads // International Conference on Intelligent Systems for Molecular Biology 2020
online; konferencija, 2020. (poster, međunarodna recenzija, neobjavljeni rad, ostalo) -
23.Vrček, Lovro; Veličković, Petar; Šikić, MileA step towards neural genome assembly // NeurIPS 2020 Learning Meets Combinatorial Algorithms Workshop
online; konferencija, 2020. (poster, međunarodna recenzija, neobjavljeni rad, ostalo) -
24.Stanojević Dominik; Šikić MileDetecting Base Modifications in DNA Sequences // Book of Abstracts of Fifth International Workshop on Data Science
Zagreb, Hrvatska, 2020. str. 58-60 (poster, prošireni sažetak, znanstveni) -
25.Wolf, FilipPopravljanje djelomično sastavljenoga genoma pomoći Hi-C očitanja, 2020., diplomski rad, preddiplomski, Fakultet elektrotehnike i računarstva, Zagreb