Pregled po projektu: De novo sastavljanje genoma i metagenoma (SIGMA) (MB: HRZZ-IP-2018-01-5886)
Pronađeno 19 radova
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1.Šikić, MileFacilitating genome structural variation analysis // Nature methods, 20 (2023), 491-492 doi:10.1038/s41592-023-01767-5 (međunarodna recenzija, članak, znanstveni)
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2.Šikić, MileAsian Reference Genome Project // International Genome Graph Symposium 2022
Ascona, Švicarska, 2022. (pozvano predavanje, neobjavljeni rad, znanstveni) -
3.Nguyen, Tram Anh; Heng, Jia Wei Joel; Kaewsapsak, Pornchai; Kok, Eng Piew Louis; Stanojević, Dominik; Liu, Hao; Cardilla, Angelysia; Praditya, Albert; Yi, Zirong; Lin, Mingwan et al.Direct identification of A-to-I editing sites with nanopore native RNA sequencing // Nature methods, 19 (2022), 833-844 doi:10.1038/s41592-022-01513-3 (međunarodna recenzija, članak, znanstveni)
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4.Lim, Abner Herbert; Low, Zhen Jie; Shingate, Prashant Narendra; Jing, Han Hong; Chong, Shu Chen; Ng, Cedric Chuan Young; Liu, Wei; Vaser, Robert; Šikić, Mile; Sung, Wing-Kin Ken et al.Genome assembly and chemogenomic profiling of National Flower of Singapore Papilionanthe Miss Joaquim ‘Agnes’ reveals metabolic pathways regulating floral traits // Communications biology, 5 (2022), 967, 9 (međunarodna recenzija, članak, znanstveni)
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5.Penić, Rafael JosipDeep learning model of nanopore sequencing pore, 2021., diplomski rad, diplomski, Fakultet elektrotehnike i računarstva, Zagreb
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6.Pratljačić, SuzanaRapid overlapping of Single Molecule High-Fidelity Sequencing Data, 2021., diplomski rad, diplomski, Zagreb
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7.Pavlić, StanislavDNA Nanopore Sequencing Basecaller, 2021., diplomski rad, diplomski, Zagreb
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8.Bakić, SaraRapid Microbe Detection Using Deep Learning, 2021., diplomski rad, diplomski, Zagreb
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9.Deur, SanjaDetection of Modified Nucleotides Using Nanopore Sequencing and Deep Learning Methods, 2021., diplomski rad, diplomski, Zagreb
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10.Penić, Rafael JosipDeep Learning Model of Nanopore Sequencing Pore, 2021., diplomski rad, diplomski, Zargeb
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11.Vaser, Robert; Šikić, MileTime- and memory-efficient genome assembly with Raven // Nature Computational Science, 1 (2021), 332-336 doi:10.1038/s43588-021-00073-4 (međunarodna recenzija, članak, znanstveni)
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12.Lipovac, JosipaDetection of Modified Nucleotide Clusters in Nanopore Sequenced RNA Reads, 2021., diplomski rad, diplomski, Fakultet elektrotehnike i računarstva, Zagreb
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13.Staver, MauroBrzo poravnanje visoko pouzdanih dugačkih očitanja, 2021., diplomski rad, preddiplomski, Fakultet elektrotehnike i računarstva, Zagreb
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14.Rašić, MarinPoopćenje algoritma za poravnanje parcijalnog uređaja, 2021., diplomski rad, preddiplomski, Fakultet elektrotehnike i računarstva, Zagreb
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15.Klabučar, IvanStruktura podataka za efikasno spremanje očitanja dobivenih sekvenciranjem genoma, 2021., diplomski rad, preddiplomski, Fakultet elektrotehnike i računarstva, Zagreb
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16.Duvnjak, Sanja; Pavlinec, Željko; Vaser, Robert; Križanović, Krešimir; Šikić, Mile; Zdelar-Tuk, Maja; Reil, Irena; Spičić, SilvioEfficacy of next-generation sequencing in bacterial zoonoses diagnostics // Veterinarska stanica, 53 (2021), 1; 1-10 doi:10.46419/vs.53.1.9 (podatak o recenziji nije dostupan, članak, ostalo)
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17.Baksa, MirnaMicrobe Detection Using Deep Learning, 2020., diplomski rad, diplomski, Fakultet elektrotehnike i računarstva, Zagreb
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18.Vaser, Robert; Šikić, MileYet another de novo genome assembler // 11th International Symposium on Image and Signal Processing and Analysis (ISPA 2019)
Dubrovnik, Hrvatska, 2019. str. 147-151 doi:10.1109/ISPA.2019.8868909 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), ostalo) -
19.Bertrand, Denis; Shaw, Jim; Kalathiyappan, Manesh; Ng, Amanda Hui Qi; Kumar, M. Senthil; Li, Chenhao; Dvornicic, Mirta; Soldo, Janja Paliska; Koh, Jia Yu; Tong, Chengxuan et al.Hybrid metagenomic assembly enables high- resolution analysis of resistance determinants and mobile elements in human microbiomes // Nature biotechnology, 37 (2019), 8; 937-944 doi:10.1038/s41587-019-0191-2 (međunarodna recenzija, članak, znanstveni)
