Pregled po projektu: Računalna genomika mikrobnih okoliša i bioinformatika ekstremofila (MB: MZOS-119-0982913-1211)
Pronađeno 59 radova
Prikaz po CROSBI kategorijama
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1.The 3rd Adriatic Meeting on Computational Solutions in Life Sciences : book of abstracts / Babić, Darko ; Došlić, Nadja ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.). Zagreb: Institute of Computational Life Sciences (ICLS), 2009 (zbornik)
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2.The 2nd Opatija Meeting on Computational Solutions in Life Sciences : book of abstracts / Babić, Darko ; Došlić, Nadja ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.). Zagreb: Institute of Computational Life Sciences (ICLS), 2007 (zbornik)
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1.Franke, Vedran; Šikić, Mile; Vlahoviček, KristianPrediction of interacting protein residues using sequence and structure data. // Computational Drug Discovery and Design / Riccardo Baron (ur.).
New York (NY) : Dordrecht : Heidelberg : London: Springer, 2012. str. 233-251 -
2.Šegota, Igor; Glažar, Petar; Vlahoviček, KristianMADNet: A Web Server for Contextual Analysis and Visualization of High-Throughput Experiments // Systems Biology for Signaling Networks / Choi, Sangdun (ur.).
New York (NY): Springer, 2010. str. 660-672 -
1.Abe, Ken-ichiro; Yamamoto, Ryoma; Franke, Vedran; Cao, Minjun; Suzuki, Yutaka; Suzuki, Masataka G; Vlahoviček, Kristian; Svoboda, Petr; Schultz, Richard M; Aoki, FugakuThe first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing // EMBO journal, 34 (2015), 11; 1523-1537 doi:10.15252/embj.201490648 (međunarodna recenzija, članak, znanstveni)
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2.(Roadmap Epigenomics Consortium) Kundaje, Anshul; Meuleman, Wouter; Ernst, Jason; Bilenky, Misha; Yen, Angela; Heravi-Moussavi, Alireza; Kheradpour, Pouya; Zhang, Zhizhuo; Wang, Jianrong; Ziller, Michael J. et al.Integrative Analysis of 111 Reference Human Epigenomes // Nature, 518 (2015), 7539; 317-330 doi:10.1038/nature14248 (međunarodna recenzija, članak, znanstveni)
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3.Polak, Paz; Karlić, Rosa; Koren, Amnon; Thurman, Robert; Sandstrom, Richard; Lawrence, Michael S.; Reynolds, Alex; Rynes, Eric; Vlahoviček, Kristian; Stamatoyannopoulos, John A.; Sunyaev, Shamil R.Cell-of-origin chromatin organization shapes the mutational landscape of cancer // Nature, 518 (2015), 7539; 360-364 doi:10.1038/nature14221 (međunarodna recenzija, članak, znanstveni)
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4.Koren, Amnon; Handsaker, Robert E.; Kamitaki, Nolan; Karlić, Rosa; Ghosh, Sulagna; Polak, Paz; Eggan, Kevin; McCarroll, Steven A.Genetic variation in human DNA replication timing // Cell, 159 (2014), 5; 1015-1026 doi:10.1016/j.cell.2014.10.025 (međunarodna recenzija, članak, znanstveni)
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5.Yukawa, Masashi; Akiyama, Tomohiko; Franke, Vedran; Mise, Nathan; Isagawa, Takayuki; Suzuki, Yutaka; Suzuki, Masataka G.; Vlahoviček, Kristian; Abe, Kuniya; Aburatani, Hiroyuki; Aoki, FugakuGenome-Wide Analysis of the Chromatin Composition of Histone H2A and H3 Variants in Mouse Embryonic Stem Cells // PLoS One, 9 (2014), 3; e92689, 13 doi:10.1371/journal.pone.0092689 (međunarodna recenzija, članak, znanstveni)
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6.Falanga, Alessia; Stojanovic, Ozren; Kiffer-Moreira, Tina; Pinto, Sofia; Millan, Jose Luis; Vlahoviček, Kristian; Baralle, MarcoExonic splicing signals impose constraints upon the evolution of enzymatic activity // Nucleic acids research, 42 (2014), 9; 5790-5798 doi:10.1093/nar/gku240 (međunarodna recenzija, članak, znanstveni)
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7.Flemr, Matyas; Malik, Radek; Franke, Vedran; Nejepinska, Jana; Sedlacek, Radislav; Vlahoviček, Kristian; Svoboda, PetrA retrotransposon-driven Dicer isoform directs endogenous siRNA production in mouse oocytes // Cell, 155 (2013), 4; 807-816 doi:10.1016/j.cell.2013.10.001 (međunarodna recenzija, članak, znanstveni)
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8.Roller, Maša; Lucić, Vedran; Nagy, István; Perica, Tina; Vlahoviček, KristianEnvironmental shaping of codon usage and functional adaptation across microbial communities // Nucleic acids research, 41 (2013), 19; 8842-8852 doi:10.1093/nar/gkt673 (međunarodna recenzija, članak, znanstveni)
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9.Zampieri, Stefania; Montalvo, Annalisa; Blanco, Mariana; Zanin, Irene; Amartino, Hernan; Vlahoviček, Kristian; Szlago, Marina; Schenone, Andrea; Pittis, Gabriela; Bembi, Bruno; Dardis, AndreaMolecular analysis of HEXA gene in Argentinean patients affected with Tay–Sachs disease: Possible common origin of the prevalent c.459 + 5A>G mutation // Gene, 499 (2012), 2; 262-265 doi:10.1016/j.gene.2012.03.022 (međunarodna recenzija, članak, znanstveni)
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10.Pinto, Sofia; Vlahoviček, Kristian; Buratti, EmanuelePRO-MINE: A Bioinformatics Repository and Analytical Tool for TARDBP Mutations // Human mutation, 32 (2011), 1; E1948-E1958 doi:10.1002/humu.21393 (međunarodna recenzija, članak, znanstveni)
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11.Perina, Dragutin; Korolija, Marina; Roller, Maša; Harcet, Matija; Jeličić, Branka; Mikoč, Andreja; Ćetković, HelenaOver-represented localized sequence motifs in ribosomal protein gene promoters of basal metazoans // Genomics, 98 (2011), 1; 56-63 doi:10.1016/j.ygeno.2011.03.009 (međunarodna recenzija, članak, znanstveni)
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12.Harcet, Matija; Roller, Maša; Ćetković, Helena; Perina, Dragutin; Wiens, Matthias; Müller, Werner E.G.; Vlahoviček, KristianDemosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans // Molecular biology and evolution, 27 (2010), 12; 2747-2756 doi:10.1093/molbev/msq174 (međunarodna recenzija, članak, znanstveni)
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13.Supek, Fran; Škunca, Nives; Repar, Jelena; Vlahoviček, Kristian; Šmuc, TomislavTranslational Selection Is Ubiquitous in Prokaryotes // Plos genetics, 6 (2010), 6; e1001004, 13 doi:10.1371/journal.pgen.1001004 (međunarodna recenzija, članak, znanstveni)
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14.Pučić, Maja; Pinto, Sofie; Novokmet, Mislav; Knežević, Ana; Gornik, Olga; Polašek, Ozren; Vlahoviček, Kristian; Wang, Wei; Rudd, Pauline M,; Wright, Alan F. et al.Common aberrations from the normal human plasma N-glycan profile // Glycobiology, 20 (2010), 8; 970-975 doi:10.1093/glycob/cwq052 (međunarodna recenzija, članak, znanstveni)
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15.Karlić, Rosa; Chung, Ho-Ryun; Lasserre, Julia; Vlahoviček, Kristian; Vingron, MartinHistone modification levels are predictive for gene expression // Proceedings of the National Academy of Sciences of the United States of America, 107 (2010), 7; 2926-2931 doi:10.1073/pnas.0909344107 (međunarodna recenzija, članak, znanstveni)
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16.Zampieri, Stefania; Filocamo, Mirella; Buratti, Emanuele; Stroppiano, Marina; Vlahoviček, Kristian; Rosso, Natalia; Bignulin, Eleonora; Regis, Stefano; Carnevale, Franco; Bembi, Bruno; Dardis, AndreaMolecular and functional analysis of the HEXB gene in Italian patients affected with Sandhoff disease: identification of six novel alleles. // Neurogenetics, 10 (2009), 1; 49-58 doi:10.1007/s10048-008-0145-1 (međunarodna recenzija, članak, znanstveni)
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17.Šikić, Mile; Tomić, Sanja; Vlahoviček, KristianPrediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests // Plos computational biology, 5 (2009), 1; e1000278-1 doi:10.1371/journal.pcbi.1000278 (međunarodna recenzija, članak, znanstveni)
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18.Šegota, Igor; Bartoniček, Nenad; Vlahoviček, KristianMADNet: MicroArray Database Network web server // Nucleic Acids Research, 36 (2008), Suppl. S; W332-W335 doi:10.1093/nar/gkn289 (međunarodna recenzija, članak, znanstveni)
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19.Mihel, Josip; Šikić, Mile; Tomić, Sanja; Jeren Branko; Vlahoviček, KristianPSAIA - Protein Structure and Interaction Analyzer // BMC structural biology, 8 (2008), 21, 11 doi:10.1186/1472-6807-8-21 (međunarodna recenzija, članak, znanstveni)
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1.Harcet, Matija; Roller Milošević, Maša; Ćetković, Helena; Perina, Dragutin; Wiens, Matthias; Mueller, Werner; Vlahoviček, KristianDemosponge EST Sequencing Reveals a Complex Genetic Toolkit of the Simplest Metazoans // Comparative Genomics of Eukaryotic Microorganisms
Sant Feliu de Guíxols, 2011. str. 150-150 (poster, međunarodna recenzija, sažetak, znanstveni) -
2.Pinto, Sofia; Tica, Jelena; Vlahoviček, KristianComputational Analysis of Plasma Glycome and Genotypes // EMBO YIP PhD Course, Spotlights on Current Biology / Gerlind Wallon (ur.).
Heidelberg, Njemačka, 2011. (predavanje, sažetak, znanstveni) -
3.Pinto, Sofia; Stojanović, Ozren, Vlahoviček, KristianComputational analysis of exonic splicing enhancers // Book of Abstracts of the 10th Congress of the Croatian Society of Biochemistry and Molecular Biology with international participation "The secret life of biomolecules", HDBMB2010 / Kovarik, Zrinka ; Varlje, Jadranka (ur.).
Rijeka: Hrvatsko Društvo za Biotehnologiju, 2010. str. 155-155 (poster, međunarodna recenzija, sažetak, znanstveni) -
4.Roller, Maša; Lucić, Vedran; Perica, Tina; Vlahoviček, KristianTranslational optimization and functional adaptation across microbial communities // EMBO YIP PhD Course, Spotlights on Current Biology / Gerlind Wallon (ur.).
Heidelberg, Njemačka, 2010. str. 13-13 (predavanje, sažetak, znanstveni) -
5.Roller, Maša; Lucić, Vedran; Perica, Tina; Vlahoviček, KristianTranslational optimization and functional adaptation across microbial communities // The EMBO meeting: advancing the life sciences
Barcelona, Španjolska, 2010. str. 97-97 (predavanje, međunarodna recenzija, sažetak, znanstveni) -
6.Kokan, Tina; Vlahoviček, KristianComputational analysis of the relationship between transcription and DNA flexibility in human and fruit fly DNA // Book of Abstracts of the 10th Congress of the Croatian Society of Biochemistry and Molecular Biology with international participation "The secret life of biomolecules", HDBMB2010 / Kovarik, Zrinka ; Varlje, Jadranka (ur.).
Rijeka: Hrvatsko Društvo za Biotehnologiju, 2010. str. 154-154 (poster, međunarodna recenzija, sažetak, znanstveni) -
7.Lucić, Vedran; Roller, Maša; Perica, Tina; Vlahoviček, KristianTranslational optimization and functional adaptation across microbial communities // Book of Abstracts of the 10th Congress of the Croatian Society of Biochemistry and Molecular Biology with international participation "The secret life of biomolecules", HDBMB2010 / Kovarik, Zrinka ; Varlje, Jadranka (ur.).
Rijeka: Hrvatsko Društvo za Biotehnologiju, 2010. str. 153-153 (poster, međunarodna recenzija, sažetak, znanstveni) -
8.Roller, Maša; Lucić, Vedran; Perica, Tina; Vlahoviček, KristianTranslational optimization and functional adaptation across microbial communities // The EMBO meeting: advancing the life sciences
Barcelona, Španjolska, 2010. str. 97-97 (poster, međunarodna recenzija, sažetak, znanstveni) -
9.Pinto, Sofia; Stojanović, Ozren; Vlahoviček, KristianComputational Analysis of Exonic Splicing Regulators // The 3rd Adriatic Meeting on Computational Solutions in Life Sciences : book of abstracts / Babić, Darko et al. (ur.).
Zagreb: Institute of Computational Life Sciences (ICLS), 2009. (poster, sažetak, znanstveni) -
10.Lucić, Vedran; Roller Milošević, Maša; Perica, Tina; Vlahoviček, KristianCodon usage at the level of microbial communities // Acta Microbiol Immunol Hun / Nagy, Karoly ; Marialigeti, Karoly (ur.).
Budimpešta: Akadémiai Kiadó, 2009. (plenarno, međunarodna recenzija, sažetak, znanstveni) -
11.Lucić, Vedran; Perica, Tina; Roller Milošević, Maša; Vlahoviček, KristianCodon usage bias in metagenomes // Book of Abstracts, The 3rd Adriatic Meeting on Computational Solutions in Life Sciences
Zagreb, 2009. str. 64-64 (poster, sažetak, znanstveni) -
12.Kokan, Tina; Karlić, Rosa; Vlahoviček, KristianFlexibility profiling of gene transcription start and end sites on human and fruit fly DNA // 50 godina molekularne biologije u Hrvatskoj
Zagreb, Hrvatska, 2008. (poster, sažetak, znanstveni) -
13.Lucić, Vedran; Perica, Tina; Vlahoviček, KristianCodon usage bias in metagenomes // EMBO YIP PhD Course, Spotlights on Current Biology / Gerlind Wallon (ur.).
Heidelberg, 2008. str. 11-11 (predavanje, sažetak, znanstveni) -
14.Kokan, Tina; Vlahoviček, KristianComputational analysis of the location of highly curved DNA regions in human genome // The 2nd Opatija meeting On Computational Solutions in the Life Sciences / Babić, Darko ; Došlić, Nađa ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.).
Zagreb: Institute of Computational Life Sciences (ICLS), 2007. (poster, sažetak, znanstveni) -
1.Pinto, Sofia; Vlahoviček, KristianData Classification Based on Machine Learning // EMBO YIP PhD Course 2011, Spotlights on Current Biology
Heidelberg, Njemačka, 2011. (poster, neobjavljeni rad, znanstveni) -
2.Harcet, Matija; Roller, Maša; Ćetković, Helena; Perina, Dragutin; Wiens, Matthias; Müller, Werner E.G.; Vlahoviček, KristianDemosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans // EMBO Bioinformatics & Comparative Genome Analyses
Pariz, Francuska, 2011. (predavanje, sažetak, znanstveni) -
3.Pinto, Sofia; Tica, Jelena; Vlahoviček, KristianAdvanced computing can identify people with specific glyco-phenotypes // Glycomics meets genomics - novel strategies in combining omics approaches
Dubrovnik, Hrvatska, 2010. (pozvano predavanje, neobjavljeni rad, znanstveni) -
4.Karlić, Rosa; Chung, Ho-Ryun; Lasserre, Julia; Vlahoviček, Kristian; Vingron, Martin.Histone modification levels are predictive for gene expression // 18th Annual International Conference Intelligent Systems for Molecular Biology
Boston (MA), Sjedinjene Američke Države, 2010. (predavanje, međunarodna recenzija, neobjavljeni rad, znanstveni) -
5.Karlić, Rosa; Chung, Ho-Ryun; Lasserre, Julia; Vlahoviček, Kristian; Vingron, Martin.Histone modification levels are predictive of gene expression // IRI chromatin days : Chromatin Remodeling
Lille, Francuska, 2010. (pozvano predavanje, neobjavljeni rad, znanstveni) -
6.Karlić, Rosa; Chung, Ho-Ryun; Lasserre, Julia; Vlahoviček, Kristian; Vingron, MartinTowards a histone code for transcription. // RECOMB Regulatory Genomics and Systems Biology
Boston (MA), Sjedinjene Američke Države, 2009. (poster, međunarodna recenzija, sažetak, znanstveni) -
7.Kokan, Tina; Vlahoviček, KristianStructure-function relationship between flexibility and transcription initiation and termination in human and fruit fly DNA // EMBO Young Scientists Forum
Zagreb, Hrvatska, 2009. (poster, neobjavljeni rad, znanstveni) -
8.Pinto, Sofia; Stojanović, Ozren; Vlahoviček, KristianComputational Analysis of Exonic Splicing Regulators // EMBO Young Scientists Forum
Zagreb, Hrvatska, 2009. (poster, neobjavljeni rad, znanstveni) -
9.Kokan, Tina; Vlahoviček, KristianStructure-function relationship between flexibility and transcription initiation and termination in human and fruit fly DNA // EMBO YIP PhD Course 2009
Heidelberg, Njemačka, 2009. (predavanje, pp prezentacija, znanstveni) -
10.Lucić, Vedran; Perica, Tina; Roller Milošević, Maša; Vlahoviček, KristianCodon usage bias in metagenomes // EMBO Young Scientists Forum
Zagreb, Hrvatska, 2009. (poster, neobjavljeni rad, znanstveni) -
11.Karlić, Rosa; Vlahoviček, Kristian; Vingron, MartinHistone modifications and transcriptional regulation // 16th Annual International Conference Intelligent Systems for Molecular Biology
Toronto, Kanada, 2008. (poster, međunarodna recenzija, neobjavljeni rad, znanstveni) -
12.Pinto, Sofia; Stojanović, Ozren; Vlahoviček, KristianRačunalna Analiza Regulatora Izrezivanja u Egzonima // 50 godina molekularne biologije u Hrvatskoj
Zagreb, Hrvatska, 2008. (predavanje, pp prezentacija, znanstveni) -
13.Lucić, Vedran; Perica, Tina; Roller Milošević, Maša; Vlahoviček, KristianCodon usage bias in metagenomes // 50 godina molekularne biologije u Hrvatskoj
Zagreb, Hrvatska, 2008. (poster, sažetak, znanstveni) -
1.Šikić, MileRačunalna metoda za predviđanje mjesta proteinskih interakcija, 2008., doktorska disertacija, Fakultet elektrotehnike i računarstva, Zagreb
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1.Glažar, PetarContextual analysis and visualization of high- throughput data, 2011., diplomski rad, Prirodoslovno-matematički fakultet, Zagreb
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2.Tica, JelenaComputational analysis of plasma glycome and genotypes in human population, 2011., diplomski rad, diplomski, Prirodoslovno-matematički fakultet, Zagreb
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3.Vedran FrankePredviđanje protein - protein interakcija iz primarne strukture putem "random forest" klasifikatora, 2010., diplomski rad, diplomski, Prirodoslovno - Matematičcki Fakultet, Zagreb
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4.Roller Milošević, MašaAnalysis of metagenomes in extreme environments, 2009., diplomski rad, Prirodoslovno-matematički fakultet, Zagreb
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5.Stojanović, OzrenComputational analysis of exonic splicing regulators, 2008., diplomski rad, Prirodoslovno-matematički fakultet, Zagreb
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6.Vitezić, MoranaPrimjena upotrebe obrazaca kodonau molekularnoj evoluciji, 2008., diplomski rad, Prirodoslovno-matematički fakultet, Zagreb
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7.Kokan, TinaRačunalna analiza položaja visokozakrivljenih regija u genomu čovjeka, 2007., diplomski rad, Prirodoslovno-matematički fakultet, Zagreb
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1.Sumić, SaraRačunalna analiza nekodirajućeg dijela transkriptoma u modelu embrionalnog razvoja miša (Mus musculus), 2011. (podatak o recenziji nije dostupan, rektorova nagrada).
