Pregled po projektu: Proučavanje biomakromolekula računalnim metodama i razvoj novih algoritama (MB: MZOS-098-1191344-2860)
Pronađeno 140 radova
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101.Šikić, KrešimirAlgoritmi za utvrđivanje fleksibilnosti proteina na temelju konformacije i fizikalnih svojstava proteina, 2008., doktorska disertacija, Fakultet elektrotehnike i računarstva, Zagreb
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102.Šikić, Krešimir; Tomić, Sanja, Jeren, BrankoIdentifying protein flexibility by NMA // Proceedings of the 2008 International Conference on Bioinformatics & Computational Biology / Arabnia, Hamid R. (ur.).
Las Vegas (NV), Sjedinjene Američke Države, 2008. str. 927-933 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni) -
103.Šikić, Krešimir; Tomić, Sanja; Jeren, BrankoThe protein secondary structure flexibility // Proceedings of the 2008 International Conference on Bioinformatics & Computational Biology / Arabnia, Hamid R. (ur.).
Las Vegas (NV), Sjedinjene Američke Države, 2008. str. 918-926 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni) -
104.Tomić, SanjaForce field based methods for computational study of macromolecules // Hottest Topics in Protein Research : Book of abstracts
Zagreb, 2008. str. 7-8 (pozvano predavanje, sažetak, znanstveni) -
105.Tomić, SanjaŽivot modeliran vodom // Fizikalni aspekti vode / Darko Androić (ur.).
Zagreb: PMF-Zagreb, 2008. str. 50-57 (pozvano predavanje, domaća recenzija, cjeloviti rad (in extenso), stručni) -
106.Sabolović, JasminaDevelopment of Molecular Mechanics (MM) Force Fields for Modelling of Copper(II) Amino Acid Complexes in Different Environments // The International Conference on Theory and Applications of Computational Chemistry – TACC 2008, Šangaj, Kina 2008. Book of Programme and Abstract for TACC2008 / Wei, Dongqing (ur.).
Shanghai: Shanghai Jiao Tong University, IASIA, 2008. str. 156-157 (pozvano predavanje, međunarodna recenzija, sažetak, znanstveni) -
107.Sabolović, JasminaModelling Structural Properties of Bis(glycinato)copper(II) in Aqueous Solution // Proceedings of the Eighth Triennial Congress of the World Association of Theoretical and Computational Chemists (WATOC 2008) / Jordan, Meredith (ur.).
Sydney: World Association of Theoretical and Computational Chemists, 2008. str. PP139-PP139 (poster, međunarodna recenzija, sažetak, znanstveni) -
108.Šikić, MileRačunalna metoda za predviđanje mjesta proteinskih interakcija, 2008., doktorska disertacija, Fakultet elektrotehnike i računarstva, Zagreb
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109.Tomić, SanjaCombined 3D QSAR and QM/MM Study of the Burkholderia cepacia Lipase Enantioselectivity // Protein Design and Evolution for Biocatalysis, Book of Abstracts
Sant Feliu de Guíxols, Španjolska, 2008. (predavanje, sažetak, ostalo) -
110.Savić, Bojana; Tomić, Sanja; Magnus, Volker; Salopek-Sondi, BrankaBrILL2, auksin amidohidrolaza iz kineskog kupusa (Brassica rapa L.) // Zbornik sažetaka / Zahradka, Ksenija ; Plohl, Miroslav ; Ambriović-Ristov, Andreja (ur.).
Zagreb: Institut Ruđer Bošković, 2008. str. 74-74 (poster, domaća recenzija, sažetak, znanstveni) -
111.Salopek-Sondi, Branka; Savić, Bojana; Tomić, Sanja; Magnus, VolkerInsight into structure and function of the plant enzyme, auxin amido-hydrolase // Book of abstracts of the HDBMB 2008 / Strelec, Ivica ; Glavaš-Obrovac, Ljubica (ur.).
Osijek: Hrvatsko Društvo za Biotehnologiju, 2008. str. 130-130 (poster, međunarodna recenzija, sažetak, znanstveni) -
112.Savić, Bojana; Ludwig-Müller, Jutta; Tomić, Sanja; Magnus, Volker; Salopek-Sondi, BrankaCharacterization of the Brassica rapa auxin amido-hydrolase, BrILL2 // Physiologia Plantarum, Special Issue, 133 (3) / Vaughan, Hurry (ur.).
Oxford: Wiley-Blackwell, 2008. str. P01-065 (poster, međunarodna recenzija, sažetak, znanstveni) -
113.Vujasinović, Ines; Bertoša, Branimir; Tomić, Sanja; Mlinarić-Majerski, KataInfluence of the rigid spacer to macrocyclization of poly(thialactones): Synthesis and computational analysis // IUPAC Conference Santiago de Compostela
Santiago de Compostela, 2008. (predavanje, međunarodna recenzija, sažetak, znanstveni) -
114.Smith, Ana-Sunčana; Sengupta, Kheya; Goennenwein, Stefanie; Seifert, Udo; Sackmann, ErichForce-induced growth of adhesion domains is controlled by receptor mobility // Proceedings of the National Academy of Sciences of the United States of America, 105 (2008), 19; 6906-6911 doi:10.1073/pnas.0801706105 (međunarodna recenzija, članak, znanstveni)
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115.Tomić, Sanja; Ceilinger, Igor; Janežić, Dušanka; Hodošček, MilanTowards understanding enentio-selective enzyme catalysed chemical transformation of pro-drugs // Abstracts book / Tsantili-Kakoulidou, Anna (ur.).
Atena: University of Athens, 2008. str. 35-35 (predavanje, sažetak, ostalo) -
116.Tomić, Sanja; Ceilinger, Igor; Hodošček, Milan; Janežić, DušankaQM/MM Study of the Burkholderia cepacia Lipase Catalyzed Secondary Alcohol Esterification // Book of Abstracts - The Conference on Molecular Simulations in Biosystems and Material Science / Nielabla, P. (ur.).
Konstanz: Universitaet Konstanz, 2008. str. 92-92 (poster, sažetak, ostalo) -
117.Mihel, Josip; Šikić, Mile; Tomić, Sanja; Jeren Branko; Vlahoviček, KristianPSAIA - Protein Structure and Interaction Analyzer // BMC structural biology, 8 (2008), 21, 11 doi:10.1186/1472-6807-8-21 (međunarodna recenzija, članak, znanstveni)
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118.Dokmanić, Ivan; Šikić, Mile; Tomić, SanjaMetals in proteins: correlation between the metal- ion type, coordination number and the amino-acid residues involved in the coordination // Acta crystallographica. Section D, Biological crystallography, 64 (2008), 3; 257-263 doi:10.1107/S090744490706595X (međunarodna recenzija, članak, znanstveni)
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119.Luić, Marija; Štefanić, Zoran; Ceilinger, Igor; Hodošček, Milan; Janežić, Dušanka; Lenac, Tihana; Leščić Ašler, Ivana; Šepac, Dragan; Tomić, SanjaCombined X-Ray Diffraction and QM/MM Study of the Burkholderia cepacia Lipase-Catalyzed Secondary Alcohol Esterification // The journal of physical chemistry. B, Condensed matter, materials, surfaces, interfaces & biophysical, 112 (2008), 16; 4876-4883 doi:10.1021/jp077717u (međunarodna recenzija, članak, znanstveni)
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120.Hernandez-Folgado, Laura; Schmuck, Carsten; Tomić, Sanja; Piantanida, IvoA novel pyrene-guanidiniocarbonyl-pyrrole cation efficiently differentiates between ds-DNA and ds-RNA by two independent, sensitive spectroscopic methods // Bioorganic & Medicinal Chemistry Letters, 18 (2008), 2977-2981 doi:10.1016/j.bmcl.2008.03.060 (međunarodna recenzija, članak, znanstveni)
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121.Bertoša, Branimir; Kojić-Prodić, Biserka; Wade, Rebecca; Tomić, SanjaMechanism of Auxin Interaction with Auxin Binding Protein (ABP1): A Molecular Dynamics Simulation Study // Biophysical journal, 94 (2008), 1; 27-37 doi:10.1529/biophysj.107.109025 (međunarodna recenzija, članak, znanstveni)
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122.Sabolović, Jasmina; Kaitner, BrankoThe effect of hydrogen bonding in two crystal modifications of aquabis(N, N-dimethylglycinato-
N, // Inorganica Chimica Acta, 361 (2008), 8; 2424-2436 doi:10.1016/j.ica.2007.12.016 (međunarodna recenzija, članak, znanstveni)O)copper(II): experimental and theoretical study -
123.The 2nd Opatija Meeting on Computational Solutions in Life Sciences : book of abstracts / Babić, Darko ; Došlić, Nadja ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.). Zagreb: Institute of Computational Life Sciences (ICLS), 2007 (zbornik)
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124.Tomić, Sanja; Bertoša, Branimir; Wade, C. RebeccaNon covalent interactions in protein complexes // Humboldt Conference On Noncovalent Interactions / Zarić, Snežana (ur.).
Vršac: AvH, 2007. str. 12-12 (pozvano predavanje, sažetak, znanstveni) -
125.Lorz, Barbara G.; Smith, Ana-S.; Gege, Christian; Sackmann, ErichAdhesion of Giant Vesicles Mediated by Weak Binding of Sialyl-LewisX to E-Selectin in the Presence of Repelling Poly(ethylene glycol) Molecules // Langmuir, 23 (2007), 24; 12293-12300 doi:10.1021/la701824q (međunarodna recenzija, članak, znanstveni)
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126.Tomić, Sanja; Wade, Rebecca; Wang, Ting; Bertoša, Branimir; Gabdoulline, RazifThe protein-protein interactions- molecular modelling study // 6th Central European Symposium on Theoretical Chemistry - Book of Abstracts / Anne-Marie Kelterer (ur.).
Graz: TU-Graz, 2007. str. L12-L12 (predavanje, sažetak, ostalo) -
127.Tomić, Sanja; Bertoša, Branimir; Wade, RebeccaNon Covalent Interactions In Protein Complexes // BOOK OF ABSTRACT: Humboldt Conference On Noncovalent Interactions / Zarić S. (ur.).
Vršac, 2007. (pozvano predavanje, sažetak, znanstveni) -
128.Sanja Tomić, Rebecca C. Wade, Ting Wang, Branimir Bertoša, Razif GabdoullineThe protein-protein interactions - molecular modelling study // Central European Symposium on Theoretical Chemistry
Litschau, Austrija, 2007. (predavanje, sažetak, ostalo) -
129.Tomić, Sanja; Ivan, DokmanićDivalent metal cations in proteins: abundance, coordination, function // Book of Abstracts: 16th CROATIAN-SLOVENIAN CRYSTALLOGRAPHIC MEETING
Zagreb: Hrvatska akademija znanosti i umjetnosti (HAZU), 2007. (predavanje, sažetak, znanstveni) -
130.Tomić, SanjaProučavanje međudjelovanja proteina korištenjem računala // Knjiga sažetaka 5. znanstvenog sastanka Hrvatskog fizikalnog društva
Zagreb, 2007. (poster, sažetak, znanstveni) -
131.Bertoša, Branimir; Tomić, Sanja; Wang, Ting; Wade, RebeccaCOMBINE Analysis of Interactions Between Ras Proteins and Their Effectors // 6th AFMC INTERNACIONAL MEDICAL CHEMISTRY SYMPOSIUM / Prous, J. R. (ur.).
Barcelona: Prous science, 2007. str. 79-79 (poster, međunarodna recenzija, sažetak, ostalo) -
132.Bertoša, Branimir; Wade, Rebecca; Kojić-Prodić, Biserka; Tomić, SanjaComputational simulations of ABP1 and its interactions with auxin-related molecules // The 2th Opatija Meeting on Computational Solutions in the Life Sciences / Babić, Darko ; Došlić, Nađa ; David, Smith ; Tomić, Sanja ; Kristijan, Vlahovićek (ur.).
Zagreb: Institut Ruđer Bošković, 2007. str. 30-30 (predavanje, sažetak, znanstveni) -
133.Tomić, Sanja; Bertoša, Branimir; Wang, Ting; Wade, RebeccaCOMBINE Analysis of the Specificity of Binding of Ras Proteins to their Effectors // Proteins Structure, Function, and Bioinformatics, 67 (2007), 2; 435-447 (međunarodna recenzija, članak, znanstveni)
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134.Sabolović, JasminaModelling Structural Properties of Copper(II) Amino Acid Complexes in Different Environments // Book of Abstracts of the 2nd Opatija Meeting on Computational Solutions inthe Life Sciences / Babić, Darko (ur.).
Zagreb: Institut Ruđer Bošković, 2007. str. 39-39 (pozvano predavanje, međunarodna recenzija, sažetak, znanstveni) -
135.Marković, Marijana; Sabolović, JasminaConformational analysis of bis(L-isoleucinato)copper(II) and bis(L-valinato)copper(II) // Book Of Abstracts, The 2nd Opatija Meeting on Computational Solutions in the Life Sciences / Tomić, Sanja (ur.).
Zagreb: Centre for Computational Solutions in the Life Sciences, Ruđer Bošković Institute, Zagreb, 2007. str. 77-77 (poster, međunarodna recenzija, sažetak, znanstveni) -
136.Marković, Marijana; Judaš, Nenad; Sabolović, JasminaThe Modelling of Noncovalent Interactions in the Crystal Structures of bis(L-valinato)copper (II) // Humboldt Conference on Noncovalent Interactions : Book of Abstracts / Zarić, Snežana (ur.).
Vršac, Srbija, 2007. str. 58-58 (poster, međunarodna recenzija, sažetak, znanstveni) -
137.Dokmanić, Ivan; Šikić, Mile; Tomić, SanjaKoreliranje oblika površine i hidrofobnosti proteina korištenjem razvoja u kugline funkcije // Book of abstracts, The 2nd Opatija Meeting on Computational Solutions in the Life Sciences / Babić, Darko ; Došlić, Nađa ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.).
Zagreb: Institut Ruđer Bošković, 2007. str. 69-69 (poster, međunarodna recenzija, sažetak, znanstveni) -
138.Tomašić, Ana; Bertoša, Branimir; Tomić, Sanja; Šoškić, Milan; Magnus, VolkerBinding behavior of amino acid conjugates of indole-3-acetic acid to immobilized human serum albumin // Journal of Chromatography. A, 1154 (2007), 1-2; 240-249 (međunarodna recenzija, članak, znanstveni)
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139.Smith, Ana-Sunčana; Seifert, UdoVesicles as a model for controlled (de-)adhesion of cells: a thermodynamic approach // Soft Matter, 3 (2007), 3; 275-289 (međunarodna recenzija, članak, znanstveni)
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140.Sabolović, Jasmina; Kaitner, BrankoThe Effects of Steric Aliphatic-Aliphatic Interactions in the Coordination Polymer of Bis(N, N-diethylglycinato)copper(II): Experimental Evidence and Theoretical Modeling // Polyhedron, 26 (2007), 5; 1087-1097 (međunarodna recenzija, članak, znanstveni)
