Pregled po projektu: Strojno učenje prediktivnih modela u računalnoj biologiji (MB: MZOS-098-0000000-3168)
Pronađeno 38 radova
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1.Supek, Fran; Lenher, BenClustered Mutation Signatures Reveal that Error-Prone DNA Repair Targets Mutations to Active Genes // Cell, 170 (2017), 3; 534-547 doi:10.1016/j.cell.2017.07.003 (međunarodna recenzija, članak, znanstveni)
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2.Supek, Fran; Škunca, NivesVisualizing GO Annotations // The Gene Ontology Handbook / Dessimoz, Christophe ; Škunca, Nives (ur.).
New York (NY): Humana Press, 2016. str. 207-220 -
3.Brbić, Maria; Piškorec, Matija; Vidulin, Vedrana; Kriško, Anita; Šmuc, Tomislav; Supek, FranThe landscape of microbial phenotypic traits and associated genes // Nucleic acids research, 44 (2016), 21; 10074-10090 doi:10.1093/nar/gkw964 (međunarodna recenzija, članak, znanstveni)
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4.Lindeboom, Rik; Supek, Fran; Lehner, BenThe rules and impact of nonsense-mediated mRNA decay in human cancers // Nature genetics, 48 (2016), 10; 1112-1118 doi:10.1038/ng.3664 (međunarodna recenzija, članak, znanstveni)
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5.Cho, Ara; Shim, Jung Eun; Kim, Eiru; Supek, Fran; Lehner, Ben; Lee, InsukMUFFINN: cancer gene discovery via network analysis of somatic mutation data // Genome biology, 17 (2016), 129, 16 doi:10.1186/s13059-016-0989-x (međunarodna recenzija, članak, znanstveni)
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6.Brbić, Maria; Warnecke, Tobias; Kriško, Anita; Supek, FranGlobal Shifts in Genome and Proteome Composition Are Very Tightly Coupled // Genome Biology and Evolution, 7 (2015), 6; 1519-1532 doi:10.1093/gbe/evv088 (međunarodna recenzija, članak, znanstveni)
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7.Supek, Fran; Lehner, Ben; Hajkova, Petra; Warnecke, TobiasHydroxymethylated Cytosines Are Associated with Elevated C to G Transversion Rates // Plos genetics, 10 (2014), 9; 004585, 13 doi:10.1371/journal.pgen.1004585 (međunarodna recenzija, članak, znanstveni)
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8.Vidović, Anita; Supek, Fran; Nikolić, Andrea; Kriško, AnitaSignatures of conformational stability and oxidation resistance in proteomes of pathogenic bacteria // Cell Reports, 7 (2014), 5; 1393-1400 doi:10.1016/j.celrep.2014.04.057 (međunarodna recenzija, članak, znanstveni)
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9.Levatić, Jurica; Džeroski, Sašo; Supek, Fran; Šmuc, Tomislav.Semi-Supervised Learning for Quantitative Structure- Activity Modeling // Informatica (Ljubljana), 37 (2013), 2; 173-179 (međunarodna recenzija, članak, znanstveni)
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10.Radivojac, Predrag; ...; Škunca, Nives; Supek, Fran; Bošnjak, Matko; ...; Šmuc, Tomislav; ...; Friedberg, IddoA large-scale evaluation of computational protein function prediction // Nature methods, 10 (2013), 3; 221-227 doi:10.1038/nmeth.2340 (međunarodna recenzija, članak, znanstveni)
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11.Gamberger, Dragan; Šmuc, TomislavGood Governance Problems and Recent Financial Crises in Some EU Countries // Economics-The Open Access Open-Assessment E-Journal, 7 (2013), 201341, 21 doi:10.5018/economics-ejournal.ja.2013-41 (međunarodna recenzija, članak, znanstveni)
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12.Levatić, Jurica; Ćurak, Jasna; Kralj, Marijeta; Šmuc, Tomislav; Osmak, Maja; Supek, FranAccurate Models for P-gp Drug Recognition Induced from a Cancer Cell Line Cytotoxicity Screen // Journal of medicinal chemistry, 56 (2013), 14; 5691-5708 doi:10.1021/jm400328s (međunarodna recenzija, članak, znanstveni)
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13.Škunca, Nives; Bošnjak, Matko; Kriško, Anita; Panov, Panče; Džeroski, Sašo; Šmuc, Tomislav; Supek, FranPhyletic Profiling With Cliques of Orthologs is Enhanced by Signatures of Paralogy Relationships // Plos computational biology, 9 (2012), 1; e100285, 14 doi:10.1371/journal.pcbi.1002852 (međunarodna recenzija, članak, znanstveni)
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14.Ester, Katja; Supek, Fran; Majsec, Kristina; Marjanović, Marko; Lembo, David; Donalisio, Manuela; Šmuc, Tomislav; Jarak, Ivana; Karminski-Zamola, Grace; Kralj, MarijetaPutative mechanisms of antitumor activity of cyano-substituted heteroaryles in HeLa cells // Investigational new drugs, 30 (2012), 2; 450-467 doi:10.1007/s10637-010-9571-7 (međunarodna recenzija, članak, znanstveni)
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15.Supek, Fran; Šmuc, TomislavDistance Measures and Machine Learning Approaches for Codon Usage Analyses // Codon Evolution - Mechanisms and Models / Cannarozzi, Gina ; Schneider, Adrian (ur.).
Oxford: Oxford University Press, 2011. str. 229-244 -
16.Bošnjak, Matko; Antulov-Fantulin, Nino; Šmuc, Tomislav; Gamberger, DraganConstructing recommender systems workflow templates in RapidMiner // Proceedings of the 2nd RapidMiner Community Meeting and Conference (RCOMM 2011) / Ficher, Simon ; Mierswa, Ingo (ur.).
Aachen: Shaker, 2011. str. 101-112 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), stručni) -
17.Supek, Fran; Bošnjak, Matko; Škunca, Nives; Šmuc, TomislavREVIGO summarizes and visualizes long lists of Gene Ontology terms // PLoS One, 6 (2011), 7; e21800-e21800 doi:10.1371/journal.pone.0021800 (međunarodna recenzija, članak, znanstveni)
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18.Smole, Zlatko; Nikolić, Nela; Supek, Fran; Šmuc, Tomislav; Sbalzarini, Ivo; Kriško, AnitaProteome sequence features carry signatures of the environmental niche of prokaryotes // Bmc evolutionary biology, 11 (2011), 26, 10 doi:10.1186/1471-2148-11-26 (međunarodna recenzija, članak, znanstveni)
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19.Supek, Fran; Šumanovac Ramljak, Tatjana; Marjanović, Marko; Buljubašić, Maja; Kragol, Goran; Ilić, Nataša; Šmuc, Tomislav; Zahradka, Davor; Mlinarić-Majerski, Kata; Kralj, MarijetaCould LogP be a principal determinant of biological activity in 18-crown-6 ethers? Synthesis of biologically active adamantane-substituted diaza-crowns // European Journal of Medicinal Chemistry, 46 (2011), 8; 3444-3454 doi:10.1016/j.ejmech.2011.05.009 (međunarodna recenzija, članak, znanstveni)
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20.Čož-Rakovac, Rozelinda; Lisičić, Duje; Šmuc, Tomislav; Topić Popović, Natalija; Strunjak-Perović, Ivančica; Jadan, Margita; Tadić, Zoran; Jug Dujaković, JuricaClassification Modelling of Physiological Stages in Captive Balkan Whip Snakes Using Blood Biochemistry Parameters // Journal of herpetology, 45 (2011), 4; 525-529 (međunarodna recenzija, članak, znanstveni)
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21.Supek, FranDetecting natural selection for translational efficiency in bacterial and archaeal genomes: a machine learning approach, 2010., doktorska disertacija, Prirodoslovno-matematički fakultet, Zagreb
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22.Supek, Fran; Šmuc, TomislavOn Relevance of Codon Usage to Expression of Synthetic and Natural Genes in Escherichia coli // Genetics, 185 (2010), 1129-1134 doi:10.1534/genetics.110.115477 (međunarodna recenzija, članak, znanstveni)
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23.Supek, Fran; Škunca, Nives; Repar, Jelena; Vlahoviček, Kristian; Šmuc, TomislavTranslational Selection Is Ubiquitous in Prokaryotes // Plos genetics, 6 (2010), 6; e1001004, 13 doi:10.1371/journal.pgen.1001004 (međunarodna recenzija, članak, znanstveni)
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24.Gredičak, Matija; Supek, Fran; Kralj, Marijeta, Majer, Zsuzsa; Hollosi, Miklos; Šmuc, Tomislav; Mlinarić-Majerski, Kata; Horvat, ŠteficaComputational structure-activity study directs synthesis of novel antitumor enkephalin analogs // Amino acids (Wien), 38 (2010), 4; 1185-1191 doi:10.1007/s00726-009-0329-5 (međunarodna recenzija, članak, znanstveni)
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25.Kralj, Marijeta; Tušek-Božić, Ljerka; Frkanec, LeoChemInform Abstract: Biomedical Potentials of Crown Ethers: Prospective Antitumor Agents // Cheminform, 40 (2009), 1; i-i doi:10.1002/chin.200901245 (podatak o recenziji nije dostupan, prikaz, znanstveni)
