Pregled po projektu: Generiranje potencijalnih lijekova u uvjetima in silico (MB: MZOS-058-0000000-3475)
Pronađeno 62 radova
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1.Diminic, Janko; Starčević, Antonio; Lisfi, Mohamed; Baranašić, Damir; Gacesa, Ranko; Hranueli, Daslav; Long, F Paul; Cullum, John; žučko, JuricaEvolutionary concepts in natural products discovery - what actinomycetes have taught us // Journal of industrial microbiology & biotechnology, 41 (2013), 2; 211-217 doi:10.1007/s10295-013-1337-8 (međunarodna recenzija, članak, znanstveni)
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2.Baranašić, Damir; Zucko, Jurica; Diminic, Janko; Gacesa, Ranko; Long, F Paul; Cullum, John; Hranueli, Daslav; Starcevic, AntonioPrediction of the substrate specificity of adenylation domains of non-ribosomal peptide synthetases and other protein properties by latent semantic indexing // Journal of industrial microbiology & biotechnology, 41 (2013), 2; 461-467 doi:10.1007/s10295-013-1322-2 (međunarodna recenzija, članak, znanstveni)
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3.Baranasic, Damir; Gacesa, Ranko; Starcevic, Antonio; Zucko, Jurica; Blažič, Marko; Horvat, Marinka; Gjuračić, Krešimir; Fujs, Štefan; Hranueli, Daslav; Kosec, Gregor et al.Draft genome sequence of Streptomyces rapamycinicus NRRL 5491, the producer of the immunosuppressant rapamycin // Genome announcements, 1 (2013), 4; e00581-13 (Article number) doi::10.1128/genomeA.00581-13 (međunarodna recenzija, članak, znanstveni)
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4.Dunlap, C Walter; Starcevic, Antonio; Baranasic, Damir; Diminić, Janko; Zucko, Jurica; Gacesa, Ranko; van Oppen, JH Madeleine; Hranueli, Daslav; Cullum, John; Long, F PaulKEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database // Bmc genomics, 14 (2013) doi:: 10.1186/1471-2164-14-509 (međunarodna recenzija, članak, znanstveni)
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5.Butorac, Ana; Dodig, Ivana; Bačun-Družina, Višnja; Tishbee, Arye; Mrvčić, Jasna; Hock, Karlo; Diminić, Janko; Cindrić, MarioThe effect of starvation stress on Lactobacillus brevis L62 protein profile determined by de novo sequencing in positive and negative mass spectrometry ion mode // RCM. Rapid communications in mass spectrometry, 27 (2013), 9; 1045-1054 doi:10.1002/rcm.6528 (međunarodna recenzija, članak, znanstveni)
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6.Diminić, Janko; Žučko, Jurica; Trninić Ruzić, Ida; Gačeša, Ranko; Hranueli, Daslav; Long, Paul F.; Cullum, John; Starčević, AntonioDatabases of the Thiotemplate Modular Systems (CSDB) and their in silico recombinants (r-CSDB) // Journal of industrial microbiology & biotechnology, 40 (2013), 6; 653-659 doi:10.1007/s10295-013-1252-z (međunarodna recenzija, članak, znanstveni)
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7.Žučko, Jurica; Starčević, Antonio; Diminić, Janko; Elbekali, Mouhsine; Lisfi, Mohamed; Long, Paul F.; Cullum, John; Hranueli, DaslavSynthetic Biology : A novel approach for the construction of industrial microorganisms // Food technology and biotechnology, 51 (2013), 1; 3-11 (međunarodna recenzija, pregledni rad, znanstveni)
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8.Zucko, Jurica; Fridjonsson, H Olafur; Petursdottir, K Solveig; Gacesa, Ranko; Diminic, Janko; Long, F Paul; Cullum, John; Hranueli, Daslav; Hreggvidsson, O Gudmundur; Starcevic, AntonioBrowsing metagenomes for novel starch and carbohydrate industry enzymes - AMYLOMICS case study // CURRENT OPINION IN BIOTECHNOLOGY Volume: 24 Supplement: 1 / Munis Dundar (ur.).
Amsterdam: Elsevier, 2013. str. S21-S21 (pozvano predavanje, međunarodna recenzija, sažetak, znanstveni) -
9.Starcevic, Antonio; Cindrić, Mario; Diminić, Janko; Butorac, Ana; Bačun-Družina, Višnja; Gaćeša, Ranko; Friganović, MajaMass spectrometry based clinical proteomics // Book of Abstracts / Kniewald, Zlatko (ur.).
Zagreb: Croatian Academy of Engineering and University of Zagreb, 2013. str. 118-119 (predavanje, sažetak, ostalo) -
10.Rimac, HrvojeAnotacija genskih nakupina prirodnih spojeva u genomu bakterije Streptomyces sp. C, 2013., diplomski rad, diplomski, Prehrambeno-biotehnološki fakultet, Zagreb
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11.Blažić, Marko; Starčević, Antonio; Lisfi, Mohamed; Baranašić, Damir; Goranovič, Dušan; Fujs, Štefan; Kuščer, Enej; Kosec, Gregor; Petković, Hrvoje; Cullum, John et al.Annotation of the modular polyketide synthase and nonribosomal peptide synthetase gene clusters in the genome of Streptomyces tsukubaensis NRRL18488 // Applied and environmental microbiology, 78 (2012), 23; 8183-8190 doi:10.1128/AEM.01891-12 (međunarodna recenzija, članak, znanstveni)
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12.Hranueli, Daslav; Starcevic, Antonio; Zucko, Jurica; Diminić, Janko; Gacesa, Ranko; Branasic, Damir; Long, F Paul; Cullum, JohnMicrobial genome browsing // Book of Abstracts / Silvija Černi, Martina Šeruga Musić, Dijana Škorić (ur.).
Zagreb: Hrvatsko mikrobiološko društvo, 2012. str. 21-21 (pozvano predavanje, domaća recenzija, sažetak, znanstveni) -
13.Duvnjak, MarijaPredviđanje specifičnosti izbora supstrata domena za adenilaciju, 2012., diplomski rad, diplomski, Prehrambeno-biotehnološki fakultet, Zagreb
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14.Borovička, BrankoIzolacija i strukturna karakterizacija novih poliketida, derivata antrona dobivenih biosintezom, 2012., doktorska disertacija, Fakultet kemijskog inženjerstva i tehnologije, Zagreb
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15.Long, F Paul; Weston, Andrew; Shick, Malcolm; Klueter, Anke; Iglic, Katrina; Vukelic, Ana; Starcevic, Antonio; Ward, MalcolmProteomic response of Stylophora pistillata endosymbionts to moderate ‘bleaching’ stress // Book of Abstracts / Terry Hughes (ur.).
Cairns: Australian coral reef research community, 2012. str. 96-96 (predavanje, međunarodna recenzija, sažetak, znanstveni) -
16.Cullum, John; Al-Hashmi, Heba; Lisfi, Mohamed; Zucko, Jurica; Hranueli, Daslav; Long F PaulCodon usage in large modular proteins in bacteria // Online Programme and Abstracts / Ken Wolfe (ur.).
Dublin: MCI Dublin - Professional Conference Organisers, 2012. str. P-1279 (poster, međunarodna recenzija, sažetak, znanstveni) -
17.Zucko, Jurica; Long, F Paul; Hranueli, Daslav; Cullum, JohnHorizontal gene transfer drives convergent evolution of modular polyketide synthases // Journal of industrial microbiology & biotechnology, 39 (2012), 10; 1541-1547 doi:10.1007/s10295-012-1149-2 (međunarodna recenzija, članak, znanstveni)
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18.Weston, Andrew J.; ...; Iglić, Katrina; Vukelić, Ana; Starčević, Antonio; ...; Long, F PaulA profile of an endosymbiont-enriched fraction of the coral Stylophora pistillata reveals proteins relevant to microbial-host interactions // Molecular & cellular proteomics, 11 (2012), NIL_477-NIL-495 doi:10.1074/mcp.M111.015487 (međunarodna recenzija, članak, znanstveni)
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19.Starčević, Antonio; Wolf, Kerstin; Diminić, Janko; Žučko, Jurica; Long, F Paul; Cullum, John; Hranueli, DaslavRecombinatorial biosynthesis of polyketides // Journal of industrial microbiology & biotechnology, 39 (2012), 3; 503-511 doi:10.1007/s10295-011-1049-x (međunarodna recenzija, članak, znanstveni)
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20.Starcevic, Antonio; Wolf, Kerstin; Diminic, Janko; Zucko, Jurica; Trninic Ruzic, Ida; Long F Paul; Hranueli, Daslav; Cullum, JohnModelling of homologous recombination in modular polyketide synthases combined with synthetic biology as a strategy for producing biologically active lead compounds // Abstracts / Eriko Takano (ur.).
Brisel: European Science Foundation I Research Conferences Unit, 2011. str. 63-63 (predavanje, međunarodna recenzija, sažetak, znanstveni) -
21.Zucko, Jurica; Diminic, Janko; Starcevic, Antonio; Dragovic-Uzelac, Verica; Hranueli, Daslav; Serafini, Mauro; Long F Paul; Cullum, John; Sonicki, Zdenko; Edwards KarenNutrigenomics and individual human genomes // Book of Abstracts / Medić, Helga (ur.).
Zagreb: Hrvatsko društvo prehrambenih tehnologa, biotehnologa i nutricionista, 2011. str. 51-51 (predavanje, međunarodna recenzija, sažetak, znanstveni) -
22.Starcevic, Antonio; Diminic, Janko; Zucko, Jurica; Long F Paul; Cullum, John; Hranueli, DaslavAn expert system for in silico drug design and discovery // Book of Abstracts / Medić, Helga (ur.).
Zagreb: Hrvatsko društvo prehrambenih tehnologa, biotehnologa i nutricionista, 2011. str. 29-29 (predavanje, međunarodna recenzija, sažetak, znanstveni) -
23.Starčević, Antonio; Diminić, Janko; Zucko, Jurica; Long, Paul F.; Cullum, John; Hranueli, Daslav3DIS : An expert system for in silico drug design and discovery // Proceedings of the 7th International Congress of Food Technologists, Biotechnologists and Nutritionists / Medić, Helga (ur.).
Zagreb: Hrvatsko društvo prehrambenih tehnologa, biotehnologa i nutricionista, 2011. str. 10-15 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni) -
24.Hreggvidsson, O Gudmundur; Fridjonsson, H Olafur; Petursdóttir, K Solveig; Aevarsson, Arnthor; Altenbuchner, Josef; Fotheringham, Ian; Defretin-Huchette, Sophie; Dijkhuizen, Lubbert; Diminic, Janko; Dobruchowska, Justyna et al.Amyloenzymes captured by targeted Metagenomics // CBM9 conference
Lisabon, Portugal, 2011. (poster, međunarodna recenzija, sažetak, ostalo) -
25.Cullum, John; Zucko, Jurica; Starcevic, Antonio; Diminic, Janko; Lisfi, Mohamed; Long F Paul; Hranueli, DaslavTowards novel modular polyketide synthases – lessons learnt from evolution // CIPKEBIP Annual Conference 2011 Program "Biosynthetic and metabolic engineering in industrial drug and process development" / Livija Tušar, Enej Kuščer, Hrvoje Petković, Dušan Turk (ur.).
Ljubljana: Centre of Excellence for Integrated Approaches in Chemistry and Biology of Protein, 2011. str. 9-9 (pozvano predavanje, međunarodna recenzija, sažetak, ostalo) -
26.Starcevic, Antonio; Zucko, Jurica; Diminic, Janko; Long F Paul; Cullum, John; Hranueli, DaslavGenomic data analysis - "What Would Google Do? // CIPKEBIP Annual Conference 2011 Program "Biosynthetic and metabolic engineering in industrial drug and process development" / Livija Tušar, Enej Kuščer, Hrvoje Petković, Dušan Turk (ur.).
Ljubljana: Centre of Excellence for Integrated Approaches in Chemistry and Biology of Protein, 2011. str. 11-11 (pozvano predavanje, međunarodna recenzija, sažetak, znanstveni) -
27.Gluhak, DianaDiet and genes – assessments of Diabetes mellitus type 2 biological networks, 2011., diplomski rad, diplomski, Prehrambeno-biotehnološki fakultet, Zagreb
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28.Baranašić, DamirFunctional classification of Adenylation domains by Latent Semantic Indexing (LSI), 2011., diplomski rad, diplomski, Prehrambeno-biotehnološki fakultet, Zagreb
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29.Starčević, Antonio; Diminić, Janko; Žučko, Jurica; Elbekali, Mouhsine; Schlosser, Tobias; Lisfi, Mohamed; Vukelić, Ana; Long, F Paul; Hranueli, Daslav; Cullum, JohnA novel docking domain interface model that can predict recombination between homoeologous modular biosynthetic gene clusters // Journal of industrial microbiology & biotechnology, 38 (2011), 9; 1295-1304 doi:10.1007/s10295-010-0909-0 (međunarodna recenzija, članak, znanstveni)
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30.Žučko, Jurica; Cullum, John; Hranueli, Daslav; Long, Paul F.Evolutionary dynamics of modular polyketide synthases with implications for protein design and engineering // Journal of antibiotics, 64 (2011), 1; 89-92 doi:10.1038/ja.2010.141 (međunarodna recenzija, članak, znanstveni)
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31.Cullum, John; Starčević, Antonio; Žučko, Jurica; Diminić, Janko; Long, Paul F.; Hranueli, DaslavClustScan : an integrated program package for the detection and semi-automatic annotation of secondary metabolite clusters in genomic and metagenomic DNA data sets // Handbook of Molecular Microbial Ecology, Volume I: Metagenomics and Complementary Approaches / de Bruijn, J. Frans (ur.).
Hoboken (NJ): John Wiley & Sons, 2011. str. 423-432 -
32.Cullum, John; Zucko, Jurica; Long, F Paul; Hranueli, DaslavThe evolution of modular polyketide synthases // SMBE 2010 - Annual Meeting of the Society for Molecular Biology and Evolution
Lyon, 2010. (predavanje, međunarodna recenzija, sažetak, znanstveni) -
33.Starcevic, Antonio; Dunlap, C. Walter; Cullum, John; Shick, J. Malcolm; Hranueli, Daslav; Long, F PaulGene expression in the scleractinian Acropora microphthalma exposed to high solar irradiance reveals elements of photoprotection and coral bleaching // PLoS ONE, 5 (2010), 11; e13975-1 doi::10.1371/journal.pone.0013975 (međunarodna recenzija, članak, znanstveni)
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34.Zucko, Jurica; Dunlap, C. Walter; Shick, J. Malcolm; Cullum, John; Cercelet, Francois; Amin, Bijal; Hammen, Lena; Lau, Timothy; Williams, Jamal; Hranueli, Daslav; Long, F PaulGlobal genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria // Bmc genomics, 11 (2010), -. doi::10.1186/1471-2164-11-628 (međunarodna recenzija, članak, znanstveni)
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35.Žučko, JuricaIn silico analysis of polyketide synthases, 2010., doktorska disertacija, Fachbereich Biologie, Kaiserslautern
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36.Rešetar, DinaRačunalom potpomognuta klasifikacija neribosomalno sintetiziranih peptida, 2010., diplomski rad, Prehrambeno-biotehnološki fakultet, Zagreb
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37.Žučko, Jurica; Starčević, Antonio; Diminić, Janko; Elbekali, Mouhsine; Lisfi, Mohamed; Long, Paul F.; Cullum, John; Hranueli, DaslavFrom DNA Sequences to Chemical Structures – Methods for Mining Microbial Genomic and Metagenomic Datasets for New Natural Products // Food technology and biotechnology, 48 (2010), 2; 234-242 (međunarodna recenzija, članak, znanstveni)
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38.Goldstein, Pavle; Žučko, Jurica; Vujaklija, Dušica; Kriško, Anita; Hranueli, Daslav; Long, Paul F.; Etchebest, Catherine; Basrak, Bojan; Cullum, JohnClustering of protein domains for functional and evolutionary studies // BMC bioinformatics, 10 (2009), 335, 11 doi:10.1186/1471-2105-10-335 (međunarodna recenzija, članak, znanstveni)
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39.Starčević, AntonioIn silico studies of modular biosynthetic clusters, 2009., doktorska disertacija, Fachbereich Biologie, Kaiserslautern
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40.Trninić, IdaAnotacija genskih nakupina poliketida i hibridnih sustava u genomu bakterije Streptomyces scabies, 2009., diplomski rad, Prehrambeno-biotehnološki fakultet, Zagreb
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41.Starcevic, Antonio; Akthar, Shamima; Dunlap, C. Walter; Shick, Malcolm; Hranueli, Daslav; Cullum, John; Long, F. PaulEnzymes of the shikimic acid pathway encoded in the genome of the sea anemone Nematostella vectensis have microbial origins // 6th ISS Congress
Madison (WI): International Symbiosis Society, 2009. (poster, međunarodna recenzija, sažetak, znanstveni) -
42.Cullum, John; Sonicki, Zdenko; Starčević, Antonio; Žučko, Jurica; Diminić, Janko; Long, F. Paul; Hranueli, DaslavTowards providing analyses of individual human genomes // Abstracts of the 8th Balkan Meeting on Human Genetics ; u: Pediatria Croatica (2009) S / Barišić, Ingeborg (ur.).
Zagreb: Croatian Society of Human Genetics, Croatian Society for Rare Diseases, Croatian Medical Association, 2009. str. 82 (25-GP) (predavanje, međunarodna recenzija, sažetak, stručni) -
43.Hranueli, Daslav; Sonicki, Zdenko; Starčević, Antonio; Žučko, Jurica; Diminić, Janko; Long, Paul F.; Cullum, JohnBioinformatics tools towards human genome analysis // Abstracts of the 8th Balkan Meeting on Human Genetics ; u: Pediatria Croatica (2009) S / Barišić, Ingeborg (ur.).
Zagreb: Croatian Society of Human Genetics, Croatian Society for Rare Diseases, Croatian Medical Association, 2009. str. 82 (24-GP) (predavanje, međunarodna recenzija, sažetak, ostalo) -
44.Cullum, John; Starčević, Antonio; Žučko, Jurica; Elbekali, Mouhsine; Škunca, Nives; Kovaček, Damir; Diminić, Janko; Zeljeznak, Vedran; Pavlinušić, Dobrica; Šimunković, Jurica et al.In silico generation of novel polyketides for the use in agro-industry // Proceedings of the 2008 Joint Central European Congress : the 4th Central European Congress on Food & the 6th Croatian Congress of Food Technologists, Biotechnologists and Nutritionists / Ćurić, Duška (ur.).
Zagreb: Hrvatska gospodarska komora (HGK), 2008. str. 287-294 (pozvano predavanje, domaća recenzija, cjeloviti rad (in extenso), znanstveni) -
45.Long, Paul F.; Starčević, Antonio; Žučko, Jurica; Dunlap, Walter C.; Shick, Malcom J.; Cullum, John; Hranueli, DaslavComputational strategies to unravel secondary metabolic pathways in microorganisms // AMI Association of Microbiologists of India 49th Annual Conference - International Symposium on Microbial Biotechnology : Diversity, Genomics and Metagenomics / Rup Lal (ur.).
Delhi: University of Delhi, 2008. str. 287-287 (predavanje, sažetak, znanstveni) -
46.Starčević, Antonio; Žučko, Jurica; Šimunković, Jurica; Long, Paul F.; Cullum, John; Hranueli, DaslavClustScan : An integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures // Nucleic acids research, 36 (2008), 21; 6882-6892 doi:10.1093/nar/gkn685 (međunarodna recenzija, članak, znanstveni)
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47.Castaldo, Gaetano; Žučko, Jurica; Heidelberger, Sibylle; Vujaklija, Dušica; Hranueli, Daslav; Wattana-Amorn, Pakorn; Crump, P. Matthew; Crosby, John; Long, F. PaulProposed arrangement of proteins forming a bacterial type II polyketide synthase // Chemistry & biology, 15 (2008), 11; 1156-1165 doi:10.1016/j.chembiol.2008.09.010 (međunarodna recenzija, članak, znanstveni)
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48.Hranueli, Daslav; Starčević, Antonio; Žučko, Jurica; Long, Paul F.; Cullum, JohnBioinformatic tools for mining large DNAS data sets // 4th Congress of the Slovenian Microbiological Society with International Participation : Microbiology for today : Book of abstracts / Darja Barlič-Maganja, Darja ; Raspor, Peter (ur.).
Ljubljana: Slovenian Microbiological Society, 2008. str. 139-139 (pozvano predavanje, sažetak, znanstveni) -
49.Diminic, Janko, Starcevic, AntonioThe ClustScan program package architecture // Book of Abstracts - KDSA 2008, Workshop on Knowledge Discovery in Scientific Applications / Gamberger, Dragan (ur.).
Zagreb: Institut Ruđer Bošković, 2008. (predavanje, sažetak, ostalo) -
50.Vukelić, AnaFinding regions of exact identity between two DNA sequences // Book of Abstracts - KDSA 2008, Workshop on Knowledge Discovery in Scientific Applications / Gamberger, Dragan (ur.).
Zagreb: Institut Ruđer Bošković, 2008. (predavanje, sažetak, znanstveni)
