Pregled po CROSBI profilu: Fran Supek (CROSBI Profil: 22013, MBZ: 268331)
Pronađeno 70 radova
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1.Zhou, Naihui; Jiang, Yuxiang; Bergquist, Timothy R.; Lee, Alexandra J.; Kacsoh, Balint Z.; Crocker, Alex W.; Lewis, Kimberley A.; Georghiou, George; Nguyen, Huy N.; Hamid, Md Nafiz et al.The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens // Genome Biology, 20 (2019), 1; 244, 23 doi:10.1186/s13059-019-1835-8 (međunarodna recenzija, članak, znanstveni)
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2.Mihelčić, Matej; Šmuc, Tomislav; Supek, FranPatterns of diverse gene functions in genomic neighborhoods predict gene function and phenotype // Scientific reports, 9 (2019), 1; 19537, 16 doi:10.1038/s41598-019-55984-0 (međunarodna recenzija, članak, znanstveni)
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3.Repar, Jelena; Supek, Fran; Klanjscek, Tin; Warnecke, Tobias; Zahradka, Ksenija; Zahradka, DavorGenome rearrangements in radiation-resistant bacteria // 4th Congress of Croatian Geneticists with international participation : Book of Abstracts / Šarčević, Hrvoje ; Ugarković, Đurđica ; Vujaklija, Dušica ; Svetec, Ivan Krešimir ; Svetec Miklenić, Marina (ur.).
Zagreb: Croatian Genetic Society, 2018. str. 24-24 (predavanje, recenziran, sažetak, znanstveni) -
4.Vidulin, Vedrana; Šmuc, Tomislav; Džeroski, Sašo; Supek, FranThe evolutionary signal in metagenome phyletic profiles predicts many gene functions // Microbiome, 6 (2018), 1; 129, 21 doi:10.1186/s40168-018-0506-4 (međunarodna recenzija, članak, znanstveni)
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5.Park, Solip; Supek, Fran; Lehner, BenSystematic discovery of germline cancer predisposition genes through the identification of somatic second hits // Nature Communications, 9 (2018), 1; 2601-2601 doi:10.1038/s41467-018-04900-7 (međunarodna recenzija, članak, znanstveni)
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6.Levatić, Jurica; Pavić, Kristina; Perković, Ivana; Uzelac, Lidija; Ester, Katja; Kralj, Marijeta; Kaiser, Marcel; Rottmann, Matthias; Supek, Fran; Zorc, BrankaMachine learning prioritizes synthesis of primaquine ureidoamides with high antimalarial activity and attenuated cytotoxicity // European journal of medicinal chemistry, 146 (2018), 651-667 doi:10.1016/j.ejmech.2018.01.062 (međunarodna recenzija, članak, znanstveni)
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7.Levatić, Jurica; Brbić, Maria; Stepišnik Perdih, Tomaž; Kocev, Dragi; Vidulin, Vedrana; Šmuc, Tomislav; Supek, Fran; Džeroski, SašoPhenotype prediction with semi-supervised learning // New frontiers in mining complex patterns NFMCP 2017, Lecture Notes in Computer Science
Skopje, Sjeverna Makedonija, 2017. str. 1-11 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni) -
8.Brbić, Maria; Piškorec, Matija; Vidulin, Vedrana; Kriško, Anita; Šmuc, Tomislav; Supek, FranPhenotype Inference from Text and Genomic Data // ECML-PKDD 2017, Lecture Notes in Computer Science / Altun, Yasemin ; Das, Kamalika ; et al. (ur.).
Skopje, Sjeverna Makedonija: Springer, 2017. str. 373-377 doi:10.1007/978-3-319-71273-4_34 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni) -
9.Supek, Fran; Lenher, BenClustered Mutation Signatures Reveal that Error-Prone DNA Repair Targets Mutations to Active Genes // Cell, 170 (2017), 3; 534-547 doi:10.1016/j.cell.2017.07.003 (međunarodna recenzija, članak, znanstveni)
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10.Zorc, Branka; Pavić, Kristina; Supek, Fran; Levatić, Jurica; Kaiser, MarcelAntimalarial screening of primaquine derivatives against erythrocytic stage of P. falciparum // Book of Abstracts of the 10th Joint Meeting on Medicinal Chemistry / Basarić , Nikola ; Namjesnik, Danijel ; Perković, Ivana ; Stepanić, Višnja (ur.).
Zagreb: Hrvatsko kemijsko društvo, 2017. str. 248-248 (poster, međunarodna recenzija, sažetak, ostalo) -
11.Pavić, Kristina; Levatić, Jurica; Supek, Fran; Zorc, BrankaQSAR based synthesis of novel primaquine ureidoamides // 25. Hrvatski skup kemičara i kemijskih inženjera s međunarodnim sudjelovanjem ; 3. simpozij Vladimir Prelog : knjiga sažetaka = 25th Croatian Meeting of Chemist and Chemical Engineers with international participation. 3rd symposium “Vladimir Prelog” : Book of Abstracts / Šantić, Ana ; Đaković, Marijana (ur.).
Zagreb: Croatian Chemical Society ; Croatian Society of Chemical Engineers, 2017. str. 200-200 (poster, domaća recenzija, sažetak, znanstveni) -
12.Repar, Jelena; Supek, Fran; Klanjšček, Tin; Warnecke, Tobias; Zahradka, Ksenija; Zahradka, DavorElevated rate of genome rearrangements in radiation-resistant bacteria // Genetics, 205 (2017), 4; 1677-1689 doi:10.1534/genetics.116.196154 (međunarodna recenzija, članak, znanstveni)
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13.Jiang, Yuxiang; Oron, Tal Ronnen; Clark, Wyatt T.; Bankapur, Asma R.; Supek, Fran; ...; Radivojac, PredragAn expanded evaluation of protein function prediction methods shows an improvement in accuracy // Genome Biology, 17 (2016), 1; 184, 19 doi:10.1186/s13059-016-1037-6 (međunarodna recenzija, članak, ostalo)
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14.Vidulin, Vedrana; Brbić, Maria; Supek, Fran; Šmuc, TomislavEvaluation of fusion approaches in large-scale bio-annotation setting // Proceedings of the 4th Workshop on Machine Learning in Life Sciences / Ksieniewicz, Pawel (ur.).
Wrocław: European Research Centre of Network Intelligence for Innovation Enhancement, 2016. str. 37-51 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni) -
15.Supek, Fran; Škunca, NivesVisualizing GO Annotations // The Gene Ontology Handbook / Dessimoz, Christophe ; Škunca, Nives (ur.).
New York (NY): Humana Press, 2016. str. 207-220 -
16.Brbić, Maria; Piškorec, Matija; Vidulin, Vedrana; Kriško, Anita; Šmuc, Tomislav; Supek, FranThe landscape of microbial phenotypic traits and associated genes // Nucleic acids research, 44 (2016), 21; 10074-10090 doi:10.1093/nar/gkw964 (međunarodna recenzija, članak, znanstveni)
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17.Lindeboom, Rik; Supek, Fran; Lehner, BenThe rules and impact of nonsense-mediated mRNA decay in human cancers // Nature genetics, 48 (2016), 10; 1112-1118 doi:10.1038/ng.3664 (međunarodna recenzija, članak, znanstveni)
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18.Vidulin, Vedrana; Šmuc, Tomislav; Supek, FranExtensive Complementarity between Gene Function Prediction Methods // Bioinformatics, 32 (2016), 23; 3645-3653 doi:10.1093/bioinformatics/btw532 (međunarodna recenzija, članak, znanstveni)
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19.Cho, Ara; Shim, Jung Eun; Kim, Eiru; Supek, Fran; Lehner, Ben; Lee, InsukMUFFINN: cancer gene discovery via network analysis of somatic mutation data // Genome biology, 17 (2016), 129, 16 doi:10.1186/s13059-016-0989-x (međunarodna recenzija, članak, znanstveni)
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20.Supek, FranThe Code of Silence: Widespread Associations Between Synonymous Codon Biases and Gene Function // Journal of molecular evolution, 82 (2016), 1; 65-73 doi:10.1007/s00239-015-9714-8 (međunarodna recenzija, pregledni rad, znanstveni)
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21.Repar, Jelena; Supek, Fran; Zahradka, Davor; Zahradka, KsenijaEnvironmentally induced increase of rearrangement rates in radiation resistant prokaryotes // SMBE 2015 Abstract Book
Beč, Austrija, 2015. (poster, međunarodna recenzija, sažetak, znanstveni) -
22.Brbić, Maria; Warnecke, Tobias; Kriško, Anita; Supek, FranGlobal Shifts in Genome and Proteome Composition Are Very Tightly Coupled // Genome Biology and Evolution, 7 (2015), 6; 1519-1532 doi:10.1093/gbe/evv088 (međunarodna recenzija, članak, znanstveni)
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23.Supek, Fran; Lehner, BenDifferential DNA mismatch repair underlies mutation rate variation across the human genome // Nature, 521 (2015), 81-84 doi:10.1038/nature14173 (međunarodna recenzija, članak, znanstveni)
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24.Vidulin, Vedrana; Šmuc, Tomislav; Supek, FranSpeed and accuracy benchmarks of large-scale microbial gene function prediction with supervised machine learning // Discovery science : book of abstracts
Bled, Slovenija, 2014. str. 1-3 (poster, međunarodna recenzija, prošireni sažetak, znanstveni) -
25.Supek, Fran; Lehner, Ben; Hajkova, Petra; Warnecke, TobiasHydroxymethylated Cytosines Are Associated with Elevated C to G Transversion Rates // Plos genetics, 10 (2014), 9; 004585, 13 doi:10.1371/journal.pgen.1004585 (međunarodna recenzija, članak, znanstveni)
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26.Supek, FranSynonymous mutations - from bacterial evolution to somatic changes in human cancer // XXI Jornades de Biologia Molecular
Barcelona, Španjolska, 2014. (plenarno, neobjavljeni rad, znanstveni) -
27.Vidović, Anita; Supek, Fran; Nikolić, Andrea; Kriško, AnitaSignatures of conformational stability and oxidation resistance in proteomes of pathogenic bacteria // Cell Reports, 7 (2014), 5; 1393-1400 doi:10.1016/j.celrep.2014.04.057 (međunarodna recenzija, članak, znanstveni)
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28.Supek, Fran; Minana, Belen; Valcarcel, Juan; Gabaldon, Toni; Lehner, BenSynonymous Mutations Frequently Act as Driver Mutations in Human Cancers // Cell, 156 (2014), 6; 1324-1335 doi:10.1016/j.cell.2014.01.051 (međunarodna recenzija, članak, znanstveni)
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29.Kriško, Anita; Copić, Tea; Gabaldón, Toni; Lehner, Ben; Supek, FranInferring gene function from evolutionary change in signatures of translation efficiency // Genome biology, 15 (2014), R44-1 doi:10.1186/gb-2014-15-3-r44 (međunarodna recenzija, članak, znanstveni)
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30.Levatić, Jurica; Džeroski, Sašo; Supek, Fran; Šmuc, Tomislav.Semi-Supervised Learning for Quantitative Structure- Activity Modeling // Informatica (Ljubljana), 37 (2013), 2; 173-179 (međunarodna recenzija, članak, znanstveni)
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31.Radivojac, Predrag; ...; Škunca, Nives; Supek, Fran; Bošnjak, Matko; ...; Šmuc, Tomislav; ...; Friedberg, IddoA large-scale evaluation of computational protein function prediction // Nature methods, 10 (2013), 3; 221-227 doi:10.1038/nmeth.2340 (međunarodna recenzija, članak, znanstveni)
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32.Levatić, Jurica; Ćurak, Jasna; Kralj, Marijeta; Šmuc, Tomislav; Osmak, Maja; Supek, FranAccurate Models for P-gp Drug Recognition Induced from a Cancer Cell Line Cytotoxicity Screen // Journal of medicinal chemistry, 56 (2013), 14; 5691-5708 doi:10.1021/jm400328s (međunarodna recenzija, članak, znanstveni)
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33.Repar, Jelena; Supek, Fran; Zahradka, Davor; Zahradka, KsenijaElevated rate of gene order change in radiation-resistant Deinococci // FEMS 2013 - 5th Congress of European Microbiologists
Leipzig, Njemačka, 2013. (poster, međunarodna recenzija, sažetak, znanstveni) -
34.Supek, Fran; Marcet-Houben, Marina; Gabaldon, ToniStrong signatures of expression levels in bacterial protein evolutionary trees // ECCB 2012
Basel, Švicarska, 2012. (poster, međunarodna recenzija, sažetak, znanstveni) -
35.Warnecke, Tobias; Supek, Fran; Lehner, BenNucleoid-Associated Proteins Affect Mutation Dynamics in E. coli in a Growth Phase-Specific Manner // Plos computational biology, 8 (2012), 12. doi::10.1371/journal.pcbi.1002846 (međunarodna recenzija, članak, znanstveni)
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36.Škunca, Nives; Bošnjak, Matko; Kriško, Anita; Panov, Panče; Džeroski, Sašo; Šmuc, Tomislav; Supek, FranPhyletic Profiling With Cliques of Orthologs is Enhanced by Signatures of Paralogy Relationships // Plos computational biology, 9 (2012), 1; e100285, 14 doi:10.1371/journal.pcbi.1002852 (međunarodna recenzija, članak, znanstveni)
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37.Ester, Katja; Supek, Fran; Majsec, Kristina; Marjanović, Marko; Lembo, David; Donalisio, Manuela; Šmuc, Tomislav; Jarak, Ivana; Karminski-Zamola, Grace; Kralj, MarijetaPutative mechanisms of antitumor activity of cyano-substituted heteroaryles in HeLa cells // Investigational new drugs, 30 (2012), 2; 450-467 doi:10.1007/s10637-010-9571-7 (međunarodna recenzija, članak, znanstveni)
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38.Supek, Fran; Šmuc, TomislavDistance Measures and Machine Learning Approaches for Codon Usage Analyses // Codon Evolution - Mechanisms and Models / Cannarozzi, Gina ; Schneider, Adrian (ur.).
Oxford: Oxford University Press, 2011. str. 229-244 -
39.Supek, Fran; Bošnjak, Matko; Škunca, Nives; Šmuc, TomislavREVIGO summarizes and visualizes long lists of Gene Ontology terms // PLoS One, 6 (2011), 7; e21800-e21800 doi:10.1371/journal.pone.0021800 (međunarodna recenzija, članak, znanstveni)
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40.Smole, Zlatko; Nikolić, Nela; Supek, Fran; Šmuc, Tomislav; Sbalzarini, Ivo; Kriško, AnitaProteome sequence features carry signatures of the environmental niche of prokaryotes // Bmc evolutionary biology, 11 (2011), 26, 10 doi:10.1186/1471-2148-11-26 (međunarodna recenzija, članak, znanstveni)
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41.Supek, Fran; Šumanovac Ramljak, Tatjana; Marjanović, Marko; Buljubašić, Maja; Kragol, Goran; Ilić, Nataša; Šmuc, Tomislav; Zahradka, Davor; Mlinarić-Majerski, Kata; Kralj, MarijetaCould LogP be a principal determinant of biological activity in 18-crown-6 ethers? Synthesis of biologically active adamantane-substituted diaza-crowns // European Journal of Medicinal Chemistry, 46 (2011), 8; 3444-3454 doi:10.1016/j.ejmech.2011.05.009 (međunarodna recenzija, članak, znanstveni)
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42.Supek, FranDetecting natural selection for translational efficiency in bacterial and archaeal genomes: a machine learning approach, 2010., doktorska disertacija, Prirodoslovno-matematički fakultet, Zagreb
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43.Supek, Fran; Šmuc, TomislavOn Relevance of Codon Usage to Expression of Synthetic and Natural Genes in Escherichia coli // Genetics, 185 (2010), 1129-1134 doi:10.1534/genetics.110.115477 (međunarodna recenzija, članak, znanstveni)
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44.Supek, Fran; Škunca, Nives; Repar, Jelena; Vlahoviček, Kristian; Šmuc, TomislavTranslational Selection Is Ubiquitous in Prokaryotes // Plos genetics, 6 (2010), 6; e1001004, 13 doi:10.1371/journal.pgen.1001004 (međunarodna recenzija, članak, znanstveni)
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45.Gredičak, Matija; Supek, Fran; Kralj, Marijeta, Majer, Zsuzsa; Hollosi, Miklos; Šmuc, Tomislav; Mlinarić-Majerski, Kata; Horvat, ŠteficaComputational structure-activity study directs synthesis of novel antitumor enkephalin analogs // Amino acids (Wien), 38 (2010), 4; 1185-1191 doi:10.1007/s00726-009-0329-5 (međunarodna recenzija, članak, znanstveni)
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46.Supek, Fran; Škunca, Nives; Šmuc, TomislavRedundancy Elimination and Visualization of Gene Ontology Term Lists // ISMB & ECCB 2009
Stockholm, Švedska, 2009. (poster, međunarodna recenzija, sažetak, znanstveni) -
47.Skunca, Nives; Supek, Fran; Smuc, Tomislav; Panov, Pance; Dzeroski, SasoFunctional annotation of orthologous groups by using hierarchical multi label classification // ISMB & ECCB 2009
Stockholm, Švedska, 2009. (poster, međunarodna recenzija, sažetak, znanstveni) -
48.Supek, Fran; Šmuc, Tomislav; Repar, Jelena; Škunca, NivesGORBI: Web application for the prediction of a protein's functional context // The 3rd Adriatic Meeting on Computational Solutions in the Life Sciences - Book of Abstracts / Babić, Darko ; Došlić, Nađa ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.).
Zagreb: Institute of Computational Life Sciences (ICLS), 2009. str. 76-76 (poster, međunarodna recenzija, sažetak, znanstveni) -
49.Škunca, Nives; Šmuc, Tomislav; Supek, FranREViGO: Redundancy Elimination and Visualization of Gene Ontology Term Lists // The 3rd Adriatic Meeting on Computational Solutions in the Life Sciences - Book of Abstracts / Babić, Darko ; Došlić, Nađa ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.).
Zagreb: Institute of Computational Life Sciences (ICLS), 2009. str. 75-75 (poster, međunarodna recenzija, sažetak, znanstveni) -
50.Škunca, Nives; Supek, Fran; Repar, Jelena; Šmuc, TomislavEvaluation of intergene distances across bacterial species // ECCB 2008 Proceedings
Cagliari, Italija, 2008. (poster, međunarodna recenzija, sažetak, znanstveni)
