Pregled po CROSBI profilu: David Matthew Smith (CROSBI Profil: 26953, MBZ: 260506)
Pronađeno 148 radova
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51.QM/MM study of the inactivation of B12-dependent dehydratases by substrate glycerol. // X Girona Seminar on Theoretical and Computational Chemistry for the Modeling of Biochemical Systems: From Theory to Applications / Miguel Sola (ur.).
Girona: Institut de Quimica Computational, 2012. str. 64-64 (predavanje, međunarodna recenzija, sažetak, znanstveni) -
52.QM/MM study of the inactivation of B12-dependent dehydratases by substrate glycerol. // X Girona Seminar on Theoretical and Computational Chemistry for the Modeling of Biochemical Systems: From Theory to Applications
Girona, Španjolska, 2012. str. 1-1 (predavanje, sažetak, znanstveni) -
53.Calculation of the CD spectrum of a peptide from its conformational phase space: The case of Met-enkephalin and its unnatural analogue // Journal of chemical theory and computation, 8 (2012), 5; 1694-1705 doi:10.1021/ct200868y (međunarodna recenzija, članak, znanstveni)
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54.Theoretical Studies of Radical Enzymes // Encyclopedia of Radicals in Chemistry, Biology and Materials / Chatgilialoglu, C. ; Studer, A. (ur.).
Chichester: John Wiley & Sons, 2012. str. 1547-1576 -
55.The Elusive 5'-Deoxyadenosyl Radical in Coenzyme-B12-Mediated Reactions // Journal of the American Chemical Society, 134 (2012), 3; 1591-1599 doi:10.1021/ja207809b (međunarodna recenzija, članak, znanstveni)
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56.The Protonation States of the Active-Site Histidines in (6-4) Photolyase // Journal of Chemical Theory and Computation, 8 (2012), 3; 1078-1091 doi:10.1021/ct2005648 (međunarodna recenzija, članak, znanstveni)
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57.Water ordering around small hydrophobic particles in electric fields // EAM Winter School 2011
Kirchberg am Wagram, Austrija, 2011. (predavanje, neobjavljeni rad, znanstveni) -
58.Conformational study of small peptides and relation to spectroscopy // EAM Winter School
Kirchberg am Wagram, Austrija, 2011. (predavanje, neobjavljeni rad, znanstveni) -
59.Conformational study of small peptides and its relation to circular dichroism spectroscopy // The 25th Molecular Modelling Workshop Book of Abstracts
Erlangen, Njemačka, 2011. str. 31-31 (predavanje, sažetak, znanstveni) -
60.Water ordering around small hydrophobic solutes in electric fields // The 25th Molecular Modelling Workshop Book of Abstracts
Erlangen, Njemačka, 2011. str. 24-24 (predavanje, sažetak, znanstveni) -
61.The ordering of water around hydrophobic solutes in electric fields // WATOC Poster Abstracts
Santiago de Compostela, Španjolska, 2011. (poster, sažetak, znanstveni) -
62.The Activation of Coenzyme B12 // Invited Lectures of the Ninth Triennial Congress of the World Association of Theoretical and Computational Chemists
Santiago de Compostela, Španjolska, 2011. str. 220-220 (pozvano predavanje, sažetak, znanstveni) -
63.New insights in the protonation states fo active- site histidines in (6-4) photolyase // 25th Molecular Modelling Workshop 2011
Erlangen, Njemačka, 2011. str. 34-34 (predavanje, sažetak, ostalo) -
64.Glycerol as a Substrate and Inactivator of B12-dependent Dehydratases - a QM/MM Study // Poster sesion III of the Ninth triennial congress of the World Association of Theoretical and Computational Chemists, Santiago de Compostela
Santiago de Compostela, Španjolska, 2011. str. 1-1 (poster, sažetak, ostalo) -
65.Human Dipeptidyl Peptidase III: Insights into Ligand Binding from a Combined Experimental and Computational Approach // Journal of molecular recognition, 24 (2011), 5; 804-814 doi:10.1002/jmr.1115 (međunarodna recenzija, članak, znanstveni)
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66.Computational study of the cyclopalladation mechanism of azobenzene with PdCl2 in N, N-dimethylformamide // Journal of organometallic chemistry, 696 (2011), 3; 661-669 doi:10.1016/j.jorganchem.2010.09.038 (međunarodna recenzija, članak, znanstveni)
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67.The Ruder Boskovic Institute – Today and Tomorrow // Periodicum biologorum, 112 (2010), 4; 369-374 (međunarodna recenzija, pregledni rad, ostalo)
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68.Conformational study of Met-enkephalin and its unnatural analogue using molecular dynamics // International Workshop on Modeling, Simulation and Optimization
Erlangen, Njemačka, 2010. str. 1-1 (poster, neobjavljeni rad, znanstveni) -
69.Electrophoretic mobility of hydrophobic particles // International Workshop on Modeling, Simulation and Optimization
Erlangen, Njemačka, 2010. str. 1-1 (poster, neobjavljeni rad, znanstveni) -
70.A QM/MM Insvestigation of Enzymatic Diol Dehydration // From Solid State To BioPhysics V - 'From Physics To Life Sciences'
Cavtat, Hrvatska, 2010. (poster, sažetak, ostalo) -
71.On the mechanism of biological glycerol dehydration using QM/MM techniques // 2010 International Chemical Congress of Pacific Basin Societies
Lahti, 2010. str. TECH-173 (pozvano predavanje, sažetak, znanstveni) -
72.Insights into the Mechansim of Glycerol Dehydratase through QM/MM calculations // Gordon Research Conference on Computational Chemistry
Les Diablerets, Švicarska, 2010. (predavanje, sažetak, znanstveni) -
73.Replica-Exchange Molecular Dynamics Studies on Natural and Non-Natural Opioid Peptides // Book of Abstracts, Australia-Croatia Workshop on Antimicrobial Peptides and Summer School in Biophysics PhD Programme: AMP2010 / Juretić, Davor ; Separović, Frances ; Bitunjac, Irena ; Simunić, Juraj (ur.).
Split: Faculy of Science, University of Split, 2010. str. 24-24 (pozvano predavanje, sažetak, znanstveni) -
74.Subtle Differences with Important Consequences in Enzymatic Diol Dehydration // The 5th Central European Conference – Chemistry towards Biology. Book of Abstracts / Abramić, Marija ; Maksić, Zvonimir ; Salopek-Sondi, Branka ; Tomić, Sanja ; Vianello, Robert (ur.).
Zagreb: Institut Ruđer Bošković, 2010. str. 53-53 (pozvano predavanje, sažetak, znanstveni) -
75.The study of hydrophobic solvation by molecular dynamics simulations // The 24th Molecular Modelling Workshop Book of Abstracts
Erlangen, Njemačka, 2010. str. 14-14 (poster, sažetak, znanstveni) -
76.An MD and QM/MM Study of the Active Site of (6-4) Photolyase // SFB749 Meeting, Kloster Irsee / Carell, Birgit (ur.).
München: Ludwig-Maximilians-Universitat, 2010. str. 1-1 (poster, sažetak, ostalo) -
77.Studying Enzymatic Mechanism with QM/MM Techniques: An Application to Glycerol Dehydration // The 24th Molecular Modelling Workshop Book of Abstracts
Erlangen, Njemačka, 2010. str. 28-28 (plenarno, sažetak, znanstveni) -
78.Modeling the Reactions Catalyzed by Coenzyme B12 Dependent Enzymes // Accounts of chemical research, 43 (2010), 5; 642-651 doi:10.1021/ar900260c (međunarodna recenzija, članak, znanstveni)
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79.On the thermodynamic equilibrium between (R)-2-hydroxyacyl-CoA and 2-enoyl-CoA // The FEBS journal, 277 (2010), 7; 1738-1746 doi:10.1111/j.1742-4658.2010.07597.x (međunarodna recenzija, članak, znanstveni)
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80.A Compound QM/MM Procedure: Comparative Performance on a Pyruvate Formate-Lyase Model System // Journal of computational chemistry, 31 (2010), 5; 1024-1035 doi:10.1002/jcc.21389 (međunarodna recenzija, članak, znanstveni)
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81.Proučavanje hidratacije hidrofobnih čestica molekularno dinamičkim simulacijama, 2009., diplomski rad, diplomski, Prirodoslovno-matematički fakultet, Zagreb
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82.Simulacija strukture metionin-enkefalina i njegovog neprirodnog analoga metodom molekulske dinamike, 2009., diplomski rad, diplomski, Prirodoslovno-matematički, Zagreb
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83.On the Reaction of Glycerol Dehydratase and But-3-ene-1, 2-diol // Vitamin B12 & Corphins, Organometallic Life on Earth, From Microorganisms to Humans
Oxford, Ujedinjeno Kraljevstvo, 2009. str. 1-1 (poster, sažetak, ostalo) -
84.The study of the hydration of hydrophobic particles by molecular dynamics simulations // Book of Abstracts. The 3rd Adriatic Meeting On Computational Solutions in the Life Sciences / Babić, Darko ; Došlić, Nađa ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.).
Zagreb: Institute of Computational Life Sciences (ICLS), 2009. str. 67-67 (poster, sažetak, znanstveni) -
85.The 3rd Adriatic Meeting on Computational Solutions in Life Sciences : book of abstracts / Babić, Darko ; Došlić, Nadja ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.). Zagreb: Institute of Computational Life Sciences (ICLS), 2009 (zbornik)
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86.Computational Study of the Catalytic Mechanism of B12-Independent Glycerol Dehydratase (GDH) // The 3rd Adriatic Meeting on Computational Solutions in Life Sciences, Book of Abstracts / Babić, Darko ; Došlić, Nadja ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristijan (ur.).
Zagreb: Centre for Computational Solutions in Life Sciences, Rudjer Boskovic Institute, 2009. str. 61-61 (poster, sažetak, znanstveni) -
87.Computational Investigation of Enzymatic Dehydration of Glycerol // The 3rd Adriatic Meeting on Computational Solutions in the Life Sciences, Book of Abstracts / Babić, Darko ; Došlić, Nadja ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristijan (ur.).
Zagreb: Centre for Computational Solutions in Life Sciences, Rudjer Boskovic Institute, 2009. str. 31-31 (predavanje, sažetak, znanstveni) -
88.Studying Enzymatic Mechanism with QM/MM Techniques: An Application to the Dehydration of Glycerol // Seventh International Conference of Computational Methods in Sciences and Engineering (ICCMSE 2009) Book of Abstracts
Rodos, Grčka, 2009. (pozvano predavanje, sažetak, znanstveni) -
89.A Computational Perspecitve on Glycerol Dehydration: To B12 or not to B12 // Vitamin B12 & Corphins, Organometallic Life on Earth: From Microorganisms to Humans
Oxford, Ujedinjeno Kraljevstvo, 2009. (pozvano predavanje, sažetak, znanstveni) -
90.Molecular dynamics simulations of ligands binding into the active site of human dipeptidyl-peptidases (DPPIII) // Book of Abstracts of the EMBO Young Scientists Forum
Zagreb, Hrvatska, 2009. str. 53-53 (poster, sažetak, znanstveni) -
91.Computational and experimental approach to the study of ligands binding into the active site of the human dipeptidyl-peptidases (DPPIII) // Book of Abstracts of the "The 3rd Adriatic Meeting On Computational Solutions in the Life Sciences" / Babić, Darko ; Došlić, Nađa ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.).
Zagreb: Centre for Computational Solutions in the Life Sciences, Ruđer Bošković Institute, 2009. str. 77-77 (poster, međunarodna recenzija, sažetak, znanstveni) -
92.A Computational Investigation Of Glycerol Dehydration: To B12 Or Not To B12 // XXI. Hrvatski skup kemičara i kemijskih inženjera Knjiga sažetaka / Novak, Predrag : Pičuljan, Katarina : Smolec, Sonja (ur.).
Zagreb: Petrokemija d.d., Kutina, 2009. str. 47-47 (pozvano predavanje, sažetak, ostalo) -
93.On the Importance of Ribose Orientation in the Substrate Activation of the Coenzyme B12-Dependent Mutases // Chemistry - A European Journal, 15 (2009), 34; 8578-8585 doi:10.1002/chem.200901002 (međunarodna recenzija, članak, znanstveni)
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94.On the Reaction of Glycerol Dehydratase with But-3-ene-1, 2-diol // Chemistry : a European journal, 15 (2009), 19; 4865-4873 doi:10.1002/chem.200802640 (međunarodna recenzija, članak, znanstveni)
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95.Differential Binding Affinity to PFL of Substrate Pyruvate and Inhibitor Oxamate From Thermodynamic Cycle // Biomolecular Modeling Retreat
North Stradbroke Island, Australija, 2008. (poster, neobjavljeni rad, znanstveni) -
96.Computational Investigations of Enzyme Mechanisms: An Application to Glycerol Dehydration // TACC 2008 Book of Abstracts
Šangaj, Kina, 2008. (pozvano predavanje, sažetak, znanstveni) -
97.Computational Investigations of Enzyme Mechanisms: An Application to the Diol Dehydration // WATOC 2008 Book of Abstracts
Sydney, Australija, 2008. (pozvano predavanje, sažetak, znanstveni) -
98.Coenzyme B12-Dependent Fermentation of Glycerol - A Computational Study // WATOC 2008 Book of Abstracts
Sydney, Australija, 2008. (poster, međunarodna recenzija, sažetak, znanstveni) -
99.A QM/MM Investigation of the Catalytic Mechanism of Coenzyme B12-Independent Glycerol Dehydratase // WATOC 2008 Book of Abstracts
Sydney, Australija, 2008. (poster, međunarodna recenzija, sažetak, znanstveni) -
100.A Differential Binding Affinity to PFL Between Substrate Pyruvate and Inhibitor Oxamate from Thermodynamic Cycle // Biomolecular Modeling Retreat
Stradbroke Island, Australija, 2008. (poster, sažetak, znanstveni)
