Naslov
The SBASE protein domain library, release 9.0: an online resource for protein domain identification

Autori
Vlahoviček, Kristian ; Murvai, Janos ; Barta, Endre ; Pongor, Sandor ;

Izvornik
Nucleic Acids Research (0305-1048) 1 (2002), 1; 273-275

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
BLAST search; Protein domain sequences; SBASE

Sažetak
SBASE (http://www.icgeb.trieste.it/sbase) is an online resource of protein domain sequences designed to facilitate detection of domain homologies based on a simple database search. The ninth release of the SBASE library of protein domain sequences contains 320 000 annotated structural, functional, ligand-binding and topogenic segments of proteins clustered into over 3481 domain groups and 483 protein families. Domain identification and functional prediction are based on a comparison of BLAST search outputs with a knowledge base of within-group ('self') and out-of-group ('non-self') similarities of the known domain groups. This is a memory-based approach wherein class-specific similarity functions are automatically learned from the database [Stanfill, C. and Waltz, D. (1986) COMMUN: ACM, 29, 1213-1228].

Izvorni jezik
Engleski

Znanstvena područja
Kemija

POVEZANOST RADA