Pregled bibliografske jedinice broj: 915059
Ra – Rapid de novo genome assembler
Ra – Rapid de novo genome assembler // ISMB/ECCB 2017
Prag, Češka Republika, 2017. str. 1-1 (poster, međunarodna recenzija, sažetak, znanstveni)
CROSBI ID: 915059 Za ispravke kontaktirajte CROSBI podršku putem web obrasca
Naslov
Ra – Rapid de novo genome assembler
Autori
Vaser, Robert ; Šikić, Mile
Vrsta, podvrsta i kategorija rada
Sažeci sa skupova, sažetak, znanstveni
Izvornik
ISMB/ECCB 2017
/ - , 2017, 1-1
Skup
ISMB/ECCB 2017
Mjesto i datum
Prag, Češka Republika, 21.07.2017. - 25.07.2017
Vrsta sudjelovanja
Poster
Vrsta recenzije
Međunarodna recenzija
Ključne riječi
de novo assembly, long reads
Sažetak
Ra is a novel de novo genome assembler based on the Overlap-Layout-Consensus paradigm tailored for reads produced by third generation sequencing platforms. It integrates previously developed Minimap overlap (Li, 2016), Racon consensus (Vaser et al, 2017) tools and a newly developed layout module Rala into one package. Omitting time consuming error correction in the preprocessing step enables fast genome assembly while keeping high accuracy levels. The achieved results on several read datasets generated by the Pacific Biosciences sequencing platforms are comparable with those of similar de novo assemblers Hinge (Kamath et al, 2017) and Miniasm+Racon in contiguity, accuracy and running time.
Izvorni jezik
Engleski
Znanstvena područja
Biologija, Računarstvo
POVEZANOST RADA
Ustanove:
Fakultet elektrotehnike i računarstva, Zagreb
