Pregled bibliografske jedinice broj: 844445
De novo assembly using long error-prone reads
De novo assembly using long error-prone reads, 2016., diplomski rad, diplomski, Fakultet elektrotehnike i računarstva, Zagreb
CROSBI ID: 844445 Za ispravke kontaktirajte CROSBI podršku putem web obrasca
Naslov
De novo assembly using long error-prone reads
Autori
Kostelac, Mario
Vrsta, podvrsta i kategorija rada
Ocjenski radovi, diplomski rad, diplomski
Fakultet
Fakultet elektrotehnike i računarstva
Mjesto
Zagreb
Datum
01.02
Godina
2016
Stranica
59
Mentor
Šikić, Mile
Ključne riječi
De novo assembly; PacBio; Oxford Nanopore Technologies; layout
Sažetak
Assembling genomes from long error-prone reads without error correction seems like a promising method. The thesis shows that layout methods used for assembling genomes from short reads can be utilized for assembling from long error- prone reads, if coupled with new methods for eliminating the noise from a dataset. Methods are validated with two datasets of Escherichia coli (PacBio and Oxford Nanopore Technologies). Results are compared with results of the miniasm assembler.
Izvorni jezik
Engleski
Znanstvena područja
Računarstvo
POVEZANOST RADA
Ustanove:
Fakultet elektrotehnike i računarstva, Zagreb
Profili:
Mile Šikić
(mentor)
