Naslov
Analyser and viewer of protein inter-residue contacts

Autori
Bojović, Viktor ; Lučić, Bono ; Skala, Karolj ; Grubišić, Ivan

Vrsta, podvrsta i kategorija rada
Radovi u zbornicima skupova, cjeloviti rad (in extenso), znanstveni

Izvornik
Proceedings of the 33rd International Convention MIPRO 2010 / Biljanović, Petar ; Skala, Karolj - Zagreb : Denona, 2010, 299-302

ISBN
978-953-233-051-9

Skup
33rd International Convention MIPRO 2010

Mjesto i datum
Opatija, Hrvatska, 24.05.2010. - 28.05.2010

Vrsta sudjelovanja
Predavanje

Vrsta recenzije
Međunarodna recenzija

Ključne riječi
Analyser ; viewer ; protein ; inter-residue

Sažetak
This service is made in order to achieve more efficient insight into the nature of hydrophobic or hydrophilic forces in proteins. It enables to visualize details and specificity in contacts between amino acid residues in proteins. In addition, it is possible to visualize contributions of inter-residue contacts depending on selected physical and chemical properties of amino acid residues (current version is based on the hydrophobicity scale intoroduced by J. Kyte and R. F. Doolittle, J. Mol. Biol., vol. 157, p. 105-132, 1982). Choosing one amino acid residue, distances between its side chain and side chains of all amino acid residues within the sphere of chosen radius can be visualized. Current version of database included in the server contains only 100 proteins crucial for performing research on modeling of protein folding rates and some antimicrobial polypetides, but it will be enlarged by new sequences. Visualization is available in png, povray, and vrml format, and the PDB format output is also available.

Izvorni jezik
Engleski

Znanstvena područja
Biologija, Računarstvo

POVEZANOST RADA