Naslov
Protein Data Bank Graphics Generator on Grid

Autori
Bojović, Viktor ; Lučić, Bono ; Skala, Karolj

Vrsta, podvrsta i kategorija rada
Radovi u zbornicima skupova, cjeloviti rad (in extenso), znanstveni

Izvornik
Proceedings Vol. I. MEET&GVS 32rd International Convention MIPRO 2009 / Biljanović, Petar ; Skala, Karolj - Rijeka : Hrvatska udruga za informacijsku i komunikacijsku tehnologiju, elektroniku i mikroelektroniku - MIPRO, 2009, 341-345

ISBN
978-953-233-044-1

Skup
MIPRO 2009 - 32rd International Convention on Information and Communication Technology, Electronics and Microelectronics ; Grid and Visualization Systems Conference

Mjesto i datum
Opatija, Hrvatska, 25.05.2009. - 29.05.2009

Vrsta sudjelovanja
Predavanje

Vrsta recenzije
Međunarodna recenzija

Ključne riječi
Protein data bank; Relational model; PostgreSQL database; JavaScripts; Computer grid; Animation rendering; POV-Ray format; Draving methods; Coloring schemes

Sažetak
Experimental data acquired from NMR, X-ray diffraction and other experimental methods are usually stored into formatted files called PDB files that can be found at [1]. Searching through PDB files and extracting or visually representing the results, usually requires a lot of programming or using a variety of software. To make these tasks easier we created the relational model of a database, and our web interface, which enables the user to send queries to database, retrieve the results, export them into ASCII text format or POV-Ray format and send them to a computer grid for rendering the animation. For the needs of software development we used 143 PDB files, a PostgreSQL database, and Perl scripts for importing the data from PDB files, a PHP interface with JavaScripts and a computer grid for animation rendering. The result is represented textually or in POV-Ray format with three drawing methods and five color schemes available and rendered. Application can be found at this address: [10].

Izvorni jezik
Engleski

Znanstvena područja
Kemija, Elektrotehnika

POVEZANOST RADA