Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats

Paar, Vladimir; Pavin, Nenad; Basar, Ivan; Rosandić, Marija; Glunčić, Matko; Paar, Nils

doi:10.1186/1471-2105-9-466

Pregled bibliografske jedinice broj: 402926

Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats

Paar, Vladimir; Pavin, Nenad; Basar, Ivan; Rosandić, Marija; Glunčić, Matko; Paar, Nils

Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats // BMC bioinformatics, 9 (2008), 466-1 doi:10.1186/1471-2105-9-466 (međunarodna recenzija, članak, znanstveni)

CROSBI ID: 402926 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats

Autori
Paar, Vladimir ; Pavin, Nenad ; Basar, Ivan ; Rosandić, Marija ; Glunčić, Matko ; Paar, Nils

Izvornik
BMC bioinformatics (1471-2105) 9 (2008); 466-1

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
hierarchical structure; primary periodicities; secondary periodicities; alphoid; higher order repeats

Sažetak
We used method based on Discrete Fourier Transform with mapping of symbolic into numerical sequence to identify and study alphoid higher order repeats. For HORs we found the power spectrum which shows equidistant frequency pattern with characteristic two-level hierarchical organization as signature of HOR.

Izvorni jezik
Engleski

POVEZANOST RADA

Projekti:
119-0982464-1253 - KSA kompjutorsko istraživanje repeticija višeg reda i duplikona u humanom genomu (Paar, Vladimir, MZOS ) ( CroRIS)

Ustanove:
Prirodoslovno-matematički fakultet, Zagreb

Profili:

Ivan Basar (autor)