Naslov
The ClustScan program package architecture

Autori
Diminic, Janko, Starcevic, Antonio

Vrsta, podvrsta i kategorija rada
Sažeci sa skupova, sažetak, ostalo

Izvornik
Book of Abstracts - KDSA 2008, Workshop on Knowledge Discovery in Scientific Applications / Gamberger, Dragan - Zagreb : Institut Ruđer Bošković, 2008

Skup
KDSA 2008, Workshop on Knowledge Discovery in Scientific Applications

Mjesto i datum
Poreč, Hrvatska, 17.10.2008. - 19.10.2008

Vrsta sudjelovanja
Predavanje

Vrsta recenzije
Nije recenziran

Ključne riječi
ClustScan; program package; Java client; Linux server application; PostgreSQL; eclipse RC (Rich Client Platform)

Sažetak
The ClustScan program package was developed as Java client and Linux server application. To develop the Linux server application several programming languages (Java, Perl, PHP, etc.) were used and implemented as a Web service (SOAP) that acts as a wrapper for a number of command-line bioinformatics tools (HMMER, GeneMark, Glimmer, ClustalW, etc.) specific for Linux operating system. On the other hand, for the database (DBMS) implemented within the ClustScan program package the PostgreSQL was used. To develop the backbone of Java client application the eclipse RCP (Rich Client Platform) technology was used featuring fast SWT graphical interface. In the near future we will develop the ClustScan database (CSDB) as a publically available Web application. The CSDB will allow browsing, searching and manipulation of data from polyketide and peptide gene clusters annotated by ClustScan program package using bioinformatics programs such as BLAST, ClustalW, Phylip and others. The ClustScan program package and the CSDB database will offer novel and user friendly approaches for the presentation of the biological data.

Izvorni jezik
Engleski

Znanstvena područja
Biotehnologija

POVEZANOST RADA