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Pregled bibliografske jedinice broj: 1085765

Setting a baseline for global urban virome surveillance in sewage

(The Global Sewage Surveillance project consortium) Nieuwenhuijse, David F.; Oude Munnink, Bas B.; Phan, My V. T.; Hendriksen, Rene S.; Bego, Artan; Rees, Catherine; Heather Neilson, Elizabeth; Coventry, Kris; Collignon, Peter; Allerberger, Franz et al.
Setting a baseline for global urban virome surveillance in sewage // Scientific reports, 10 (2020), 1; 13748, 14 (međunarodna recenzija, članak, znanstveni)

CROSBI ID: 1085765 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
Setting a baseline for global urban virome surveillance in sewage

Autori
Nieuwenhuijse, David F. ; Oude Munnink, Bas B. ; Phan, My V. T. ; Hendriksen, Rene S. ; Bego, Artan ; Rees, Catherine ; Heather Neilson, Elizabeth ; Coventry, Kris ; Collignon, Peter ; Allerberger, Franz ; Rahube, Teddie O. ; Oliveira1, Guilherme ; Ivanov, Ivan ; Sopheak, Thet ; Vuthy, Yith ; Yost, Christopher K. ; Tabo, Djim‑adjim ; Cuadros‑Orellana, Sara ; Ke, Changwen ; Zheng, Huanying ; Baisheng, Li ; Jiao, Xiaoyang ; Donado‑Godoy, Pilar ; Julien Coulibaly, Kalpy ; Hrenović, Jasna ; Jergović, Matijana ; Karpíšková, Renáta ; Elsborg, Bodil ; Legesse, Mengistu ; Eguale, Tadesse ; Heikinheimo, Annamari ; Eduardo Villacis, Jose ; Sanneh, Bakary ; Malania, Lile ; Nitsche, Andreas ; Brinkmann, Annika ; Kosi Setsoafia Saba, Courage ; Kocsis, Bela ; Solymosi, Norbert ; Thorsteinsdottir, Thorunn R. ; Hatha, Abdulla Mohamed ; Alebouyeh, Masoud ; Morris, Dearbhaile ; O’Connor, Louise ; Cormican, Martin ; Moran‑Gilad, Jacob ; Battisti, Antonio ; Alba, Patricia ; Shakenova, Zeinegul ; Kiiyukia, Ciira ; Ng’eno, Eric ; Raka, Lul ; Bērziņš, Aivars ; Avsejenko, Jeļena ; Bartkevics, Vadims ; Penny, Christian ; Rajandas, Heraa ; Parimannan, Sivachandran ; Vella Haber, Malcolm ; Pal, Pushkar ; Schmitt, Heike ; van Passel, Mark ; van de Schans, Milou G.M. ; Zuidema, Tina ; Jeunen, Gert‑Jan ; Gemmell, Neil ; Fashae, Kayode ; Louise Wester, Astrid ; Holmstad, Rune ; Hasan, Rumina ; Shakoor, Sadia ; Luz Zamudio Rojas, Maria ; Wasyl, Dariusz ; Bosevska Golubinka ; Kochubovski, Mihail ; Radu, Cojocaru ; Gassama, Amy ; Radosavljevic, Vladimir ; Tay, Moon Y.F. ; Zuniga‑Montanez, Rogelio ; Wuertz, Stefan ; Gavačová, Dagmar ; Trkov, Marija ; Keddy, Karen ; Esterhuyse, Kerneels ; Cerdà‑Cuéllar, Marta ; Pathirage, Sujatha ; Larsson, D.G.Joakim ; Norrgren, Leif ; Örn, Stefan ; Van der Heijden, Tanja ; Kumburu, Happiness Houka ; de RodaHusman, Ana Maria ; Njanpop‑Lafourcade, Berthe‑Marie ; Bidjada, Pawou ; Nikiema‑Pessinaba, Somtinda Christelle ; Levent, Belkis ; Scott Meschke, John ; Koren Beck, Nicola ; Van Dang, Chinh ; Minh Nguyen Tran, Doan ; Do Phuc, Nguyen ; Kwenda, Geoffrey ; Munk, Patrick ; Venkatakrishnan, Shweta ; Aarestrup, Frank M. ; Cotton, Matthew ; Koopmans, Marion P. G.

Kolaboracija
The Global Sewage Surveillance project consortium

Izvornik
Scientific reports (2045-2322) 10 (2020), 1; 13748, 14

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
metagenomic sequencing ; sewage ; viral pathogens ; virome ; virus

Sažetak
The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective.

Izvorni jezik
Engleski

Znanstvena područja
Biologija



POVEZANOST RADA

Ustanove:
Prirodoslovno-matematički fakultet, Zagreb,
Nastavni zavod za javno zdravstvo "Dr. Andrija Štampar"

Profili:

Avatar Url Matijana Jergović (autor)

Avatar Url Jasna Hrenović (autor)

Poveznice na cjeloviti tekst rada:

Pristup cjelovitom tekstu rada

Citiraj ovu publikaciju:

(The Global Sewage Surveillance project consortium) Nieuwenhuijse, David F.; Oude Munnink, Bas B.; Phan, My V. T.; Hendriksen, Rene S.; Bego, Artan; Rees, Catherine; Heather Neilson, Elizabeth; Coventry, Kris; Collignon, Peter; Allerberger, Franz et al.
Setting a baseline for global urban virome surveillance in sewage // Scientific reports, 10 (2020), 1; 13748, 14 (međunarodna recenzija, članak, znanstveni)
(The Global Sewage Surveillance project consortium) (The Global Sewage Surveillance project consortium) Nieuwenhuijse, D., Oude Munnink, B., Phan, M., Hendriksen, R., Bego, A., Rees, C., Heather Neilson, E., Coventry, K., Collignon, P. & Allerberger, F. (2020) Setting a baseline for global urban virome surveillance in sewage. Scientific reports, 10 (1), 13748, 14.
@article{article, author = {Nieuwenhuijse, David F. and Oude Munnink, Bas B. and Phan, My V. T. and Hendriksen, Rene S. and Bego, Artan and Rees, Catherine and Heather Neilson, Elizabeth and Coventry, Kris and Collignon, Peter and Allerberger, Franz and Rahube, Teddie O. and Oliveira1, Guilherme and Ivanov, Ivan and Sopheak, Thet and Vuthy, Yith and Yost, Christopher K. and Tabo, Djim‑adjim and Cuadros‑Orellana, Sara and Ke, Changwen and Zheng, Huanying and Baisheng, Li and Jiao, Xiaoyang and Donado‑Godoy, Pilar and Julien Coulibaly, Kalpy and Hrenovi\'{c}, Jasna and Jergovi\'{c}, Matijana and Karp\'{\i}\v{s}kov\'{a}, Ren\'{a}ta and Elsborg, Bodil and Legesse, Mengistu and Eguale, Tadesse and Heikinheimo, Annamari and Eduardo Villacis, Jose and Sanneh, Bakary and Malania, Lile and Nitsche, Andreas and Brinkmann, Annika and Kosi Setsoafia Saba, Courage and Kocsis, Bela and Solymosi, Norbert and Thorsteinsdottir, Thorunn R. and Hatha, Abdulla Mohamed and Alebouyeh, Masoud and Morris, Dearbhaile and O’Connor, Louise and Cormican, Martin and Moran‑Gilad, Jacob and Battisti, Antonio and Alba, Patricia and Shakenova, Zeinegul and Kiiyukia, Ciira and Ng’eno, Eric and Raka, Lul and B\={e}rzi\c{n }\v{s}, Aivars and Avsejenko, Je\c{l}ena and Bartkevics, Vadims and Penny, Christian and Rajandas, Heraa and Parimannan, Sivachandran and Vella Haber, Malcolm and Pal, Pushkar and Schmitt, Heike and van Passel, Mark and van de Schans, Milou G.M. and Zuidema, Tina and Jeunen, Gert‑Jan and Gemmell, Neil and Fashae, Kayode and Louise Wester, Astrid and Holmstad, Rune and Hasan, Rumina and Shakoor, Sadia and Luz Zamudio Rojas, Maria and Wasyl, Dariusz and Kochubovski, Mihail and Radu, Cojocaru and Gassama, Amy and Radosavljevic, Vladimir and Tay, Moon Y.F. and Zuniga‑Montanez, Rogelio and Wuertz, Stefan and Gava\v{c}ov\'{a}, Dagmar and Trkov, Marija and Keddy, Karen and Esterhuyse, Kerneels and Cerd\`{a}‑Cu\'{e}llar, Marta and Pathirage, Sujatha and Larsson, D.G.Joakim and Norrgren, Leif and \"{O}rn, Stefan and Van der Heijden, Tanja and Kumburu, Happiness Houka and de RodaHusman, Ana Maria and Njanpop‑Lafourcade, Berthe‑Marie and Bidjada, Pawou and Nikiema‑Pessinaba, Somtinda Christelle and Levent, Belkis and Scott Meschke, John and Koren Beck, Nicola and Van Dang, Chinh and Minh Nguyen Tran, Doan and Do Phuc, Nguyen and Kwenda, Geoffrey and Munk, Patrick and Venkatakrishnan, Shweta and Aarestrup, Frank M. and Cotton, Matthew and Koopmans, Marion P. G.}, year = {2020}, pages = {14}, chapter = {13748}, keywords = {metagenomic sequencing, sewage, viral pathogens, virome, virus}, journal = {Scientific reports}, volume = {10}, number = {1}, issn = {2045-2322}, title = {Setting a baseline for global urban virome surveillance in sewage}, keyword = {metagenomic sequencing, sewage, viral pathogens, virome, virus}, chapternumber = {13748} }
@article{article, author = {Nieuwenhuijse, David F. and Oude Munnink, Bas B. and Phan, My V. T. and Hendriksen, Rene S. and Bego, Artan and Rees, Catherine and Heather Neilson, Elizabeth and Coventry, Kris and Collignon, Peter and Allerberger, Franz and Rahube, Teddie O. and Oliveira1, Guilherme and Ivanov, Ivan and Sopheak, Thet and Vuthy, Yith and Yost, Christopher K. and Tabo, Djim‑adjim and Cuadros‑Orellana, Sara and Ke, Changwen and Zheng, Huanying and Baisheng, Li and Jiao, Xiaoyang and Donado‑Godoy, Pilar and Julien Coulibaly, Kalpy and Hrenovi\'{c}, Jasna and Jergovi\'{c}, Matijana and Karp\'{\i}\v{s}kov\'{a}, Ren\'{a}ta and Elsborg, Bodil and Legesse, Mengistu and Eguale, Tadesse and Heikinheimo, Annamari and Eduardo Villacis, Jose and Sanneh, Bakary and Malania, Lile and Nitsche, Andreas and Brinkmann, Annika and Kosi Setsoafia Saba, Courage and Kocsis, Bela and Solymosi, Norbert and Thorsteinsdottir, Thorunn R. and Hatha, Abdulla Mohamed and Alebouyeh, Masoud and Morris, Dearbhaile and O’Connor, Louise and Cormican, Martin and Moran‑Gilad, Jacob and Battisti, Antonio and Alba, Patricia and Shakenova, Zeinegul and Kiiyukia, Ciira and Ng’eno, Eric and Raka, Lul and B\={e}rzi\c{n }\v{s}, Aivars and Avsejenko, Je\c{l}ena and Bartkevics, Vadims and Penny, Christian and Rajandas, Heraa and Parimannan, Sivachandran and Vella Haber, Malcolm and Pal, Pushkar and Schmitt, Heike and van Passel, Mark and van de Schans, Milou G.M. and Zuidema, Tina and Jeunen, Gert‑Jan and Gemmell, Neil and Fashae, Kayode and Louise Wester, Astrid and Holmstad, Rune and Hasan, Rumina and Shakoor, Sadia and Luz Zamudio Rojas, Maria and Wasyl, Dariusz and Kochubovski, Mihail and Radu, Cojocaru and Gassama, Amy and Radosavljevic, Vladimir and Tay, Moon Y.F. and Zuniga‑Montanez, Rogelio and Wuertz, Stefan and Gava\v{c}ov\'{a}, Dagmar and Trkov, Marija and Keddy, Karen and Esterhuyse, Kerneels and Cerd\`{a}‑Cu\'{e}llar, Marta and Pathirage, Sujatha and Larsson, D.G.Joakim and Norrgren, Leif and \"{O}rn, Stefan and Van der Heijden, Tanja and Kumburu, Happiness Houka and de RodaHusman, Ana Maria and Njanpop‑Lafourcade, Berthe‑Marie and Bidjada, Pawou and Nikiema‑Pessinaba, Somtinda Christelle and Levent, Belkis and Scott Meschke, John and Koren Beck, Nicola and Van Dang, Chinh and Minh Nguyen Tran, Doan and Do Phuc, Nguyen and Kwenda, Geoffrey and Munk, Patrick and Venkatakrishnan, Shweta and Aarestrup, Frank M. and Cotton, Matthew and Koopmans, Marion P. G.}, year = {2020}, pages = {14}, chapter = {13748}, keywords = {metagenomic sequencing, sewage, viral pathogens, virome, virus}, journal = {Scientific reports}, volume = {10}, number = {1}, issn = {2045-2322}, title = {Setting a baseline for global urban virome surveillance in sewage}, keyword = {metagenomic sequencing, sewage, viral pathogens, virome, virus}, chapternumber = {13748} }

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE

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