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Pregled bibliografske jedinice broj: 1075101

EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020)

Kalaš, Matúš; Plantard, Laure; Lindblad, Joakim; Jones, Martin; Sladoje, Nataša; Kirschmann, Moritz A.; Chessel, Anatole; Scholz, Leandro; Rössler, Fabienne; Sáenz, Laura Nicolás et al.
EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020), 2020. doi:10.7490/f1000research.1117826.1 (ostalo).

CROSBI ID: 1075101 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020)

Autori
Kalaš, Matúš ; Plantard, Laure ; Lindblad, Joakim ; Jones, Martin ; Sladoje, Nataša ; Kirschmann, Moritz A. ; Chessel, Anatole ; Scholz, Leandro ; Rössler, Fabienne ; Sáenz, Laura Nicolás ; Gómez de Mariscal, Estibaliz ; Bogovic, John ; Dufour, Alexandre ; Heiligenstein, Xavier ; Waithe, Dominic ; Domart, Marie-Charlotte ; Karreman, Matthia ; Van de Plas, Raf ; Haase, Robert ; Hörl, David ; Paavolainen, Lassi ; Vrhovac Madunić, Ivana ; Karaica, Dean ; et al.

Izvornik
F1000Research

Vrsta, podvrsta
Ostale vrste radova, ostalo

Godina
2020

Ključne riječi
Bioimaging ; Bioimage informatics ; Bioimage analysis ; Machine learning ; Domain ontology ; Community effort ; Tools ; Workflows ; Training materials ; Interoperability ; Reliability ; Transparency ; Integration ; Open data ; Open science ; Open source ; Reproducible science ; EDAM ; NEUBIAS ; COMULIS ; ELIXIR

Sažetak
EDAM is a well-established ontology of operations, topics, types of data, and data formats that are used in bioinformatics and its neighbouring fields [1, 2] . EDAM-bioimaging is an extension of EDAM dedicated to bioimage analysis, bioimage informatics, and bioimaging. It is being developed in collaboration between the ELIXIR research infrastructure and the NEUBIAS and COMULIS COST Actions, in close contact with the Euro-BioImaging research infrastructure and the Global BioImaging network.

Izvorni jezik
Engleski

Znanstvena područja
Biologija, Interdisciplinarne prirodne znanosti, Računarstvo



POVEZANOST RADA

Ustanove:
Institut za medicinska istraživanja i medicinu rada, Zagreb

Profili:

Avatar Url Ivana Vrhovac Madunić (autor)

Avatar Url Dean Karaica (autor)

Poveznice na cjeloviti tekst rada:

doi f1000research.com edamontology.org

Citiraj ovu publikaciju:

Kalaš, Matúš; Plantard, Laure; Lindblad, Joakim; Jones, Martin; Sladoje, Nataša; Kirschmann, Moritz A.; Chessel, Anatole; Scholz, Leandro; Rössler, Fabienne; Sáenz, Laura Nicolás et al.
EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020), 2020. doi:10.7490/f1000research.1117826.1 (ostalo).
Kalaš, M., Plantard, L., Lindblad, J., Jones, M., Sladoje, N., Kirschmann, M., Chessel, A., Scholz, L., Rössler, F. & Sáenz, L. (2020) EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020). F1000Research. Ostalo doi:10.7490/f1000research.1117826.1.
@unknown{unknown, author = {Kala\v{s}, Mat\'{u}\v{s} and Plantard, Laure and Lindblad, Joakim and Jones, Martin and Sladoje, Nata\v{s}a and Kirschmann, Moritz A. and Chessel, Anatole and Scholz, Leandro and R\"{o}ssler, Fabienne and S\'{a}enz, Laura Nicol\'{a}s and G\'{o}mez de Mariscal, Estibaliz and Bogovic, John and Dufour, Alexandre and Heiligenstein, Xavier and Waithe, Dominic and Domart, Marie-Charlotte and Karreman, Matthia and Van de Plas, Raf and Haase, Robert and H\"{o}rl, David and Paavolainen, Lassi and Vrhovac Maduni\'{c}, Ivana and Karaica, Dean}, year = {2020}, DOI = {10.7490/f1000research.1117826.1}, keywords = {Bioimaging, Bioimage informatics, Bioimage analysis, Machine learning, Domain ontology, Community effort, Tools, Workflows, Training materials, Interoperability, Reliability, Transparency, Integration, Open data, Open science, Open source, Reproducible science, EDAM, NEUBIAS, COMULIS, ELIXIR}, doi = {10.7490/f1000research.1117826.1}, title = {EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020)}, keyword = {Bioimaging, Bioimage informatics, Bioimage analysis, Machine learning, Domain ontology, Community effort, Tools, Workflows, Training materials, Interoperability, Reliability, Transparency, Integration, Open data, Open science, Open source, Reproducible science, EDAM, NEUBIAS, COMULIS, ELIXIR} }
@unknown{unknown, author = {Kala\v{s}, Mat\'{u}\v{s} and Plantard, Laure and Lindblad, Joakim and Jones, Martin and Sladoje, Nata\v{s}a and Kirschmann, Moritz A. and Chessel, Anatole and Scholz, Leandro and R\"{o}ssler, Fabienne and S\'{a}enz, Laura Nicol\'{a}s and G\'{o}mez de Mariscal, Estibaliz and Bogovic, John and Dufour, Alexandre and Heiligenstein, Xavier and Waithe, Dominic and Domart, Marie-Charlotte and Karreman, Matthia and Van de Plas, Raf and Haase, Robert and H\"{o}rl, David and Paavolainen, Lassi and Vrhovac Maduni\'{c}, Ivana and Karaica, Dean}, year = {2020}, DOI = {10.7490/f1000research.1117826.1}, keywords = {Bioimaging, Bioimage informatics, Bioimage analysis, Machine learning, Domain ontology, Community effort, Tools, Workflows, Training materials, Interoperability, Reliability, Transparency, Integration, Open data, Open science, Open source, Reproducible science, EDAM, NEUBIAS, COMULIS, ELIXIR}, doi = {10.7490/f1000research.1117826.1}, title = {EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (update 2020)}, keyword = {Bioimaging, Bioimage informatics, Bioimage analysis, Machine learning, Domain ontology, Community effort, Tools, Workflows, Training materials, Interoperability, Reliability, Transparency, Integration, Open data, Open science, Open source, Reproducible science, EDAM, NEUBIAS, COMULIS, ELIXIR} }

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