Naslov
IGLOSS: iterative gapless local similarity search

Autori
Rabar, Braslav ; Zagorščak, Maja ; Ristov, Strahil ; Rosenzweig, Martin ; Goldstein, Pavle

Izvornik
Bioinformatics (1367-4803) 35 (2019), 18; 3491-3492

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
Iterative motif scanning

Sažetak
Searching for local sequence patterns is one of the basic tasks in bioinformatics. Sequence patterns might have structural, functional or some other relevance, and numerous methods have been developed to detect and analyze them. These methods often depend on the wealth of information already collected. The explosion in the number of newly available sequences calls for novel methods to explore local sequence similarity. We have developed a new method for iterative motif scanning that will look for ungapped sequence patterns similar to a submitted query. Using careful parameter estimation and an adaptation of a fast string-matching algorithm, the method performs significantly better in this context than the existing software.

Izvorni jezik
Engleski

Znanstvena područja
Matematika, Interdisciplinarne prirodne znanosti

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