Naslov
De Novo Metagenome Assembly Using Read Clustering

Autori
Škugor, Luka

Vrsta, podvrsta i kategorija rada
Ocjenski radovi, diplomski rad

Fakultet
Fakultet Elektrotehnike i Računarstva

Mjesto
Zagreb

Datum
05.07

Godina
2018

Stranica
34

Mentor
Šikić, Mile

Ključne riječi
metagenome assembly ; clustering ; DNA

Sažetak
Metagenomic assembly poses many additional challenges over single genome assembly. In this work, we tried tackling these issues by clustering reads produced by third- generation sequencing tools. In an ideal case, this would allow the use of existing de novo assembly tools for single genome assembly on metagenomic input. Our clustering implementation showed some improvement of existing tools for de novo assembly when using them for metagenome assembly, but still requires a lot of research. The source code of the solution is available at https://github.com/lukadante/rala-cluster.

Izvorni jezik
Engleski

Znanstvena područja
Računarstvo

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