Pregled bibliografske jedinice broj: 879883
RNA Transcriptome Mapping with GraphMap
RNA Transcriptome Mapping with GraphMap // Bioinformatics Research and Applications 13th International Symposium, ISBRA 2017 / Cai, Zhipeng ; Daescu, Ovidiu ; Li, Min (ur.).
Honolulu (HI), Sjedinjene Američke Države: Springer, 2017. str. XXIX-XXX (predavanje, međunarodna recenzija, sažetak, znanstveni)
CROSBI ID: 879883 Za ispravke kontaktirajte CROSBI podršku putem web obrasca
Naslov
RNA Transcriptome Mapping with GraphMap
Autori
Križanović, Krešimir ; Sović, Ivan ; Krpelnik, Ivan ; Šikić, Mile
Vrsta, podvrsta i kategorija rada
Sažeci sa skupova, sažetak, znanstveni
Izvornik
Bioinformatics Research and Applications 13th International Symposium, ISBRA 2017
/ Cai, Zhipeng ; Daescu, Ovidiu ; Li, Min - : Springer, 2017, XXIX-XXX
ISBN
978-3-319-59574-0
Skup
13th International Symposium, ISBRA 2017
Mjesto i datum
Honolulu (HI), Sjedinjene Američke Države, 29.05.2017. - 02.06.2017
Vrsta sudjelovanja
Predavanje
Vrsta recenzije
Međunarodna recenzija
Ključne riječi
RNA, transcriptome, Gene annotations, RNA alignment
Sažetak
In recent years, 3rd generation sequencing technologies have matured and are slowly replacing NGS for DNA sequencing. Since long read length is very important for RNA sequencing and most RNA mapping tools are still designed to work with short and accurate NGS reads, the application of 3rd generation technologies to RNA sequencing is still rare. In this paper we present a simple modification to a known DNA alignment tool designed for 3rd generation sequencing data that enables it to be used for RNA mapping. The results achieved surpass other available tools.
Izvorni jezik
Engleski
Znanstvena područja
Računarstvo, Biotehnologija
POVEZANOST RADA
Ustanove:
Fakultet elektrotehnike i računarstva, Zagreb
