Pregled bibliografske jedinice broj: 867263
Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance
Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance // Bioinformatics, 33 (2017), 9; 1394-1395 doi:10.1093/bioinformatics/btw753 (međunarodna recenzija, članak, znanstveni)
CROSBI ID: 867263 Za ispravke kontaktirajte CROSBI podršku putem web obrasca
Naslov
Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance
Autori
Šošić, Martin ; Šikić, Mile
Izvornik
Bioinformatics (1367-4803) 33
(2017), 9;
1394-1395
Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni
Ključne riječi
sequence alignment ; global alignment ; semi-global alignment ; edit distance
Sažetak
We present Edlib, an open-source C/C ++ library for exact pairwise sequence alignment using edit distance. We compare Edlib to other libraries and show that it is the fastest while not lacking in functionality and can also easily handle very large sequences. Being easy to use, flexible, fast and low on memory usage, we expect it to be easily adopted as a building block for future bioinformatics tools. Availability and Implementation: Source code, installation instructions and test data are freely available for download at https://github.com/Martinsos/edlib, under the MIT licence. Edlib is implemented in C/C ++ and supported on Linux, MS Windows, and Mac OS.
Izvorni jezik
Engleski
Znanstvena područja
Biologija, Računarstvo
POVEZANOST RADA
Projekti:
HRZZ-UIP-2013-11-7353 - Algoritmi za analizu slijeda genoma (AGESA) (Šikić, Mile, HRZZ ) ( CroRIS)
Ustanove:
Fakultet elektrotehnike i računarstva, Zagreb
Profili:
Mile Šikić
(autor)
Citiraj ovu publikaciju:
Časopis indeksira:
- Current Contents Connect (CCC)
- Web of Science Core Collection (WoSCC)
- Science Citation Index Expanded (SCI-EXP)
- SCI-EXP, SSCI i/ili A&HCI
- Scopus
- MEDLINE
