Naslov
Scaffolding using long error-prone reads

Autori
Čulinović, Marko

Vrsta, podvrsta i kategorija rada
Ocjenski radovi, diplomski rad, diplomski

Fakultet
Fakultet elektrotehnike i računarstva

Mjesto
Zagreb

Datum
03.06

Godina
2015

Stranica
44

Mentor
Šikić, Mile

Ključne riječi
Scaffolding; local and global realignment; POA; PacBio; Oxford Nanopore

Sažetak
Scaffolding using long error-prone reads is very promising method for completion of draft genomes. Two methods were proposed for extending contigs in draft genomes. First one is based on local and global realignment of possible extension reads and second one uses POA algorithm for generating consensus sequence from these reads. Program was tested on two different types of long reads, PacBio and Oxford Nanopore Technologies. Project is implemented in C++ programming language.

Izvorni jezik
Engleski

Znanstvena područja
Računarstvo

POVEZANOST RADA