Naslov
Identify pathogen organisms from a stream of RNA sequences

Autori
Šošić, Matija

Vrsta, podvrsta i kategorija rada
Ocjenski radovi, diplomski rad, diplomski

Fakultet
Fakultet Elektrotehnike i računarstva

Mjesto
Zagreb

Datum
29.06

Godina
2014

Stranica
33

Mentor
Šikić, Mile

Ključne riječi
Keywords: metagenomics; bioinformatics; RNA-Seq

Sažetak
Metagenomics is an interesting new field of science focused on characterization of microbial communities from environmental samples. It is especially important as many organisms cannot be cultivated in a laboratory and therefore can reveal previously unknown species. This thesis presents a taxonomy- dependent alignment-based method for determining species present in a given metagenomic sample. Main premise is identification and analysis of ribosomal coding sequences which are considered to be indicators of presence of organisms. The solution works with RNA-seq data and is tested on a real dataset from an environmental sample

Izvorni jezik
Engleski

Znanstvena područja
Računarstvo

POVEZANOST RADA