Naslov
Genetic variation in human DNA replication timing

Autori
Koren, Amnon ; Handsaker, Robert E. ; Kamitaki, Nolan ; Karlić, Rosa ; Ghosh, Sulagna ; Polak, Paz ; Eggan, Kevin ; McCarroll, Steven A.

Izvornik
Cell (0092-8674) 159 (2014), 5; 1015-1026

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
cell proliferation; chromosome; DNA replication timing; gene expression; genetic polymorphism; genetic variability; human; quantitative trait locus

Sažetak
Genomic DNA replicates in a choreographed temporal order that impacts the distribution of mutations along the genome. We show here that DNA replication timing is shaped by genetic polymorphisms that act in cis upon megabase-scale DNA segments. In genome sequences from proliferating cells, read depth along chromosomes reflected DNA replication activity in those cells. We used this relationship to analyze variation in replication timing among 161 individuals sequenced by the 1000 Genomes Project. Genome-wide association of replication timing with genetic variation identified 16 loci at which inherited alleles associate with replication timing. We call these "replication timing quantitative trait loci" (rtQTLs). rtQTLs involved the differential use of replication origins, exhibited allele-specific effects on replication timing, and associated with gene expression variation at megabase scales. Our results show replication timing to be shaped by genetic polymorphism and identify a means by which inherited polymorphism regulates the mutability of nearby sequences.

Izvorni jezik
Engleski

Znanstvena područja
Biologija

POVEZANOST RADA