Pregled bibliografske jedinice broj: 547320
On Uniform Representation of Proteins by Distance Matrix
On Uniform Representation of Proteins by Distance Matrix // Quantum Frontiers of Atoms and Molecules / Putz, Mihai V (ur.).
New York (NY): Nova Science Publishers, 2011. str. 521-538
CROSBI ID: 547320 Za ispravke kontaktirajte CROSBI podršku putem web obrasca
Naslov
On Uniform Representation of Proteins by Distance Matrix
Autori
Randić, Milan ; Vračko, Marjan ; Novič, Marjana ; Plavšić, Dejan
Vrsta, podvrsta i kategorija rada
Poglavlja u knjigama, znanstveni
Knjiga
Quantum Frontiers of Atoms and Molecules
Urednik/ci
Putz, Mihai V
Izdavač
Nova Science Publishers
Grad
New York (NY)
Godina
2011
Raspon stranica
521-538
ISBN
1616681586
Ključne riječi
protein, 2020 distance matrix, uniform representation, graphical representation, DNA, RNA secondary structure
Sažetak
We outline an approach that associates with each protein a 20×20 distance matrix, regardless of protein size. In this way, for the first time, all proteins are represented uniformly. The distance matrix is constructed from a lattice representation of proteins in which to each amino acid is assigned a pair of integer Cartesian coordinates by averaging the coordinates for all amino acids of the same kind. The new uniform representation of proteins is illustrated on ND6 proteins of chimpanzee. The possibility of using this novel distance matrix for a uniform nomenclature of proteins is also discussed.
Izvorni jezik
Engleski
Znanstvena područja
Kemija
POVEZANOST RADA
Projekti:
098-0982929-2917 - Spektroskopija NMR i modeliranje bioaktivnih molekula (Plavšić, Dejan, MZOS ) ( CroRIS)
Ustanove:
Institut "Ruđer Bošković", Zagreb
Profili:
Dejan Plavšić
(autor)
