Naslov
CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures

Autori
Vlahoviček, Kristian ; Pintar, Alessandro ; Parthasarathi, Laavanya ; Carugo, Oliviero ; Pongor, Sándor

Izvornik
Nucleic acids research (0305-1048) 33 (2005); W252-W254

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
-

Sažetak
The WWW servers at http://www.icgeb.org/protein/ are dedicated to the analysis of protein 3D structures submitted by the users as the Protein Data Bank (PDB) files. CX computes an atomic protrusion index that makes it possible to highlight the protruding atoms within a protein 3D structure. DPX calculates a depth index for the buried atoms and makes it possible to analyze the distribution of buried residues. CX and DPX return PDB files containing the calculated indices that can then be visualized using standard programs, such as Swiss-PDBviewer and Rasmol. PRIDE compares 3D structures using a fast algorithm based on the distribution of inter-atomic distances. The options include pairwise as well as multiple comparisons, and fold recognition based on searching the CATH fold database.

Izvorni jezik
Engleski

Znanstvena područja
Biologija, Računarstvo, Biotehnologija

POVEZANOST RADA