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Pregled bibliografske jedinice broj: 177992

Hidden Markov Models and Multiple Alignments of Protein Sequences

Goldstein, Pavle; Karaga, Maja; Kosor, Mate; Nižetić, Ivana; Tadić, Marija; Vlah, Domagoj
Hidden Markov Models and Multiple Alignments of Protein Sequences // Proceedings of the Conference on Applied Mathematics and Scientific Computing. Part 2 / Drmač, Zlatko ; Marušić, Miljenko ; Tutek, Zvonimir (ur.).
Berlin: Springer, 2005. str. 187-196 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni)

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Naslov
Hidden Markov Models and Multiple Alignments of Protein Sequences

Autori
Goldstein, Pavle ; Karaga, Maja ; Kosor, Mate ; Nižetić, Ivana ; Tadić, Marija ; Vlah, Domagoj

Vrsta, podvrsta i kategorija rada
Radovi u zbornicima skupova, cjeloviti rad (in extenso), znanstveni

Izvornik
Proceedings of the Conference on Applied Mathematics and Scientific Computing. Part 2 / Drmač, Zlatko ; Marušić, Miljenko ; Tutek, Zvonimir - Berlin : Springer, 2005, 187-196

ISBN
978-1-4020-3196-0

Skup
Conference on Applied Mathematics and Scientific Computing

Mjesto i datum
Brijuni, Hrvatska, 22.07.2003. - 26.07.2003

Vrsta sudjelovanja
Predavanje

Vrsta recenzije
Međunarodna recenzija

Ključne riječi
multiple alignment; hidden Markov model; simulated annealing; expectation maximization; suboptimal alignment

Sažetak
A multiple alignment algorithm for protein sequences is considered. Alignment is obtained from a hidden Markov model of the family, which is built using simulated annealing variant of the EM algorithm. Several methods for obtaining the optimal model/alignment are discussed and applied to a family of globins.

Izvorni jezik
Engleski

Znanstvena područja
Matematika

Napomena
DOI: 10.1007/1-4020-3197-1_1 ; e-ISBN 978-1-4020-3197-7.



POVEZANOST RADA

Projekti:
0037124

Ustanove:
Fakultet elektrotehnike i računarstva, Zagreb

Profili:

Avatar Url Pavle Goldstein (autor)

Avatar Url Mate Kosor (autor)

Avatar Url Ivana Nižetić Kosović (autor)

Avatar Url Domagoj Vlah (autor)

Avatar Url Maja Karaga (autor)

link.springer.com

Citiraj ovu publikaciju:

Goldstein, Pavle; Karaga, Maja; Kosor, Mate; Nižetić, Ivana; Tadić, Marija; Vlah, Domagoj
Hidden Markov Models and Multiple Alignments of Protein Sequences // Proceedings of the Conference on Applied Mathematics and Scientific Computing. Part 2 / Drmač, Zlatko ; Marušić, Miljenko ; Tutek, Zvonimir (ur.).
Berlin: Springer, 2005. str. 187-196 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni)
Goldstein, P., Karaga, M., Kosor, M., Nižetić, I., Tadić, M. & Vlah, D. (2005) Hidden Markov Models and Multiple Alignments of Protein Sequences. U: Drmač, Z., Marušić, M. & Tutek, Z. (ur.)Proceedings of the Conference on Applied Mathematics and Scientific Computing. Part 2.
@article{article, author = {Goldstein, Pavle and Karaga, Maja and Kosor, Mate and Ni\v{z}eti\'{c}, Ivana and Tadi\'{c}, Marija and Vlah, Domagoj}, year = {2005}, pages = {187-196}, keywords = {multiple alignment, hidden Markov model, simulated annealing, expectation maximization, suboptimal alignment}, isbn = {978-1-4020-3196-0}, title = {Hidden Markov Models and Multiple Alignments of Protein Sequences}, keyword = {multiple alignment, hidden Markov model, simulated annealing, expectation maximization, suboptimal alignment}, publisher = {Springer}, publisherplace = {Brijuni, Hrvatska} }
@article{article, author = {Goldstein, Pavle and Karaga, Maja and Kosor, Mate and Ni\v{z}eti\'{c}, Ivana and Tadi\'{c}, Marija and Vlah, Domagoj}, year = {2005}, pages = {187-196}, keywords = {multiple alignment, hidden Markov model, simulated annealing, expectation maximization, suboptimal alignment}, isbn = {978-1-4020-3196-0}, title = {Hidden Markov Models and Multiple Alignments of Protein Sequences}, keyword = {multiple alignment, hidden Markov model, simulated annealing, expectation maximization, suboptimal alignment}, publisher = {Springer}, publisherplace = {Brijuni, Hrvatska} }

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