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Pregled bibliografske jedinice broj: 1193703

Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data

Dadousis, Christos; Muñoz, Maria; Óvilo, Cristina; Fabbri, Maria Chiara; Araújo, José Pedro; Bovo, Samuele; Čandek Potokar, Marjeta; Charneca, Rui; Crovetti, Alessandro; Gallo, Maurizio et al.
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data // Scientific reports, 12 (2022), 1; 7346, 13 doi:10.1038/s41598-022-10698-8 (međunarodna recenzija, članak, znanstveni)

CROSBI ID: 1193703 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data

Autori
Dadousis, Christos ; Muñoz, Maria ; Óvilo, Cristina ; Fabbri, Maria Chiara ; Araújo, José Pedro ; Bovo, Samuele ; Čandek Potokar, Marjeta ; Charneca, Rui ; Crovetti, Alessandro ; Gallo, Maurizio ; García‑Casco, Juan María ; Karolyi, Danijel ; Kušec, Goran ; Martins, José Manuel ; Mercat, Marie‑José ; Pugliese, Carolina ; Quintanilla, Raquel ; Radović, Čedomir ; Razmaite, Violeta ; Ribani, Anisa ; Riquet, Juliet ; Savić, Radomir ; Schiavo, Giuseppina ; Škrlep, Martin ; Tinarelli, Silvia ; Usai, Graziano ; Zimmer, Christoph ; Fontanesi, Luca ; Bozzi, Riccardo

Izvornik
Scientific reports (2045-2322) 12 (2022), 1; 7346, 13

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
pig ; local breeds ; wild boar ; SNP ; admixture ; breed traceability

Sažetak
Preserving diversity of indigenous pig (Sus scrofa) breeds is a key factor to (i) sustain the pork chain (both at local and global scales) including the production of high-quality branded products, (ii) enrich the animal biobanking and (iii) progress conservation policies. Single nucleotide polymorphism (SNP) chips offer the opportunity for whole-genome comparisons among individuals and breeds. Animals from twenty European local pigs breeds, reared in nine countries (Croatia: Black Slavonian, Turopolje ; France: Basque, Gascon ; Germany: Schwabisch- Hällisches Schwein ; Italy: Apulo Calabrese, Casertana, Cinta Senese, Mora Romagnola, Nero Siciliano, Sarda ; Lithuania: Indigenous Wattle, White Old Type ; Portugal: Alentejana, Bísara ; Serbia: Moravka, Swallow-Bellied Mangalitsa ; Slovenia: Krškopolje pig ; Spain: Iberian, Majorcan Black), and three commercial breeds (Duroc, Landrace and Large White) were sampled and genotyped with the GeneSeek Genomic Profiler (GGP) 70 K HD porcine genotyping chip. A dataset of 51 Wild Boars from nine countries was also added, summing up to 1186 pigs (~ 49 pigs/breed). The aim was to: (i) investigate individual admixture ancestries and (ii) assess breed traceability via discriminant analysis on principal components (DAPC). Albeit the mosaic of shared ancestries found for Nero Siciliano, Sarda and Moravka, admixture analysis indicated independent evolvement for the rest of the breeds. High prediction accuracy of DAPC mark SNP data as a reliable solution for the traceability of breed- specific pig products.

Izvorni jezik
Engleski

Znanstvena područja
Poljoprivreda (agronomija)



POVEZANOST RADA

Projekti:
EK-H2020-634476 - DIVERSITY OF LOCAL PIG BREEDS AND PRODUCTION SYSTEMS FOR HIGH QUALITY TRADITIONAL PRODUCTS AND SUSTAINABLE PORK CHAINS (TREASURE) (Kušec, Goran; Karolyi, Danijel, EK - H2020-SFS-2014-2) ( CroRIS)

Ustanove:
Fakultet agrobiotehničkih znanosti Osijek,
Agronomski fakultet, Zagreb

Profili:

Avatar Url Goran Kušec (autor)

Avatar Url Danijel Karolyi (autor)

Poveznice na cjeloviti tekst rada:

doi www.nature.com

Citiraj ovu publikaciju:

Dadousis, Christos; Muñoz, Maria; Óvilo, Cristina; Fabbri, Maria Chiara; Araújo, José Pedro; Bovo, Samuele; Čandek Potokar, Marjeta; Charneca, Rui; Crovetti, Alessandro; Gallo, Maurizio et al.
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data // Scientific reports, 12 (2022), 1; 7346, 13 doi:10.1038/s41598-022-10698-8 (međunarodna recenzija, članak, znanstveni)
Dadousis, C., Muñoz, M., Óvilo, C., Fabbri, M., Araújo, J., Bovo, S., Čandek Potokar, M., Charneca, R., Crovetti, A. & Gallo, M. (2022) Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data. Scientific reports, 12 (1), 7346, 13 doi:10.1038/s41598-022-10698-8.
@article{article, author = {Dadousis, Christos and Mu\~{n}oz, Maria and \'{O}vilo, Cristina and Fabbri, Maria Chiara and Ara\'{u}jo, Jos\'{e} Pedro and Bovo, Samuele and \v{C}andek Potokar, Marjeta and Charneca, Rui and Crovetti, Alessandro and Gallo, Maurizio and Garc\'{\i}a‑Casco, Juan Mar\'{\i}a and Karolyi, Danijel and Ku\v{s}ec, Goran and Martins, Jos\'{e} Manuel and Mercat, Marie‑Jos\'{e} and Pugliese, Carolina and Quintanilla, Raquel and Radovi\'{c}, \v{C}edomir and Razmaite, Violeta and Ribani, Anisa and Riquet, Juliet and Savi\'{c}, Radomir and Schiavo, Giuseppina and \v{S}krlep, Martin and Tinarelli, Silvia and Usai, Graziano and Zimmer, Christoph and Fontanesi, Luca and Bozzi, Riccardo}, year = {2022}, pages = {13}, DOI = {10.1038/s41598-022-10698-8}, chapter = {7346}, keywords = {pig, local breeds, wild boar, SNP, admixture, breed traceability}, journal = {Scientific reports}, doi = {10.1038/s41598-022-10698-8}, volume = {12}, number = {1}, issn = {2045-2322}, title = {Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data}, keyword = {pig, local breeds, wild boar, SNP, admixture, breed traceability}, chapternumber = {7346} }
@article{article, author = {Dadousis, Christos and Mu\~{n}oz, Maria and \'{O}vilo, Cristina and Fabbri, Maria Chiara and Ara\'{u}jo, Jos\'{e} Pedro and Bovo, Samuele and \v{C}andek Potokar, Marjeta and Charneca, Rui and Crovetti, Alessandro and Gallo, Maurizio and Garc\'{\i}a‑Casco, Juan Mar\'{\i}a and Karolyi, Danijel and Ku\v{s}ec, Goran and Martins, Jos\'{e} Manuel and Mercat, Marie‑Jos\'{e} and Pugliese, Carolina and Quintanilla, Raquel and Radovi\'{c}, \v{C}edomir and Razmaite, Violeta and Ribani, Anisa and Riquet, Juliet and Savi\'{c}, Radomir and Schiavo, Giuseppina and \v{S}krlep, Martin and Tinarelli, Silvia and Usai, Graziano and Zimmer, Christoph and Fontanesi, Luca and Bozzi, Riccardo}, year = {2022}, pages = {13}, DOI = {10.1038/s41598-022-10698-8}, chapter = {7346}, keywords = {pig, local breeds, wild boar, SNP, admixture, breed traceability}, journal = {Scientific reports}, doi = {10.1038/s41598-022-10698-8}, volume = {12}, number = {1}, issn = {2045-2322}, title = {Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data}, keyword = {pig, local breeds, wild boar, SNP, admixture, breed traceability}, chapternumber = {7346} }

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • Social Science Citation Index (SSCI)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE

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