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Pregled bibliografske jedinice broj: 1183082

Recognition of ATT Triplex and DNA:RNA Hybrid Structures by Benzothiazole Ligands


Zonjić, Iva; Tumir, Lidija-Marija; Crnolatac, Ivo; Šupljika, Filip; Racané, Livio; Tomić, Sanja; Radić Stojković, Marijana
Recognition of ATT Triplex and DNA:RNA Hybrid Structures by Benzothiazole Ligands // Biomolecules, 12 (2022), 3; 1600173, 20 doi:10.3390/biom12030374 (međunarodna recenzija, članak, znanstveni)


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Naslov
Recognition of ATT Triplex and DNA:RNA Hybrid Structures by Benzothiazole Ligands

Autori
Zonjić, Iva ; Tumir, Lidija-Marija ; Crnolatac, Ivo ; Šupljika, Filip ; Racané, Livio ; Tomić, Sanja ; Radić Stojković, Marijana

Izvornik
Biomolecules (2218-273X) 12 (2022), 3; 1600173, 20

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
benzothiazoles ; competition dialysis ; DNA:RNA hybrids ; ATT triplex ; circular dichroism spectroscopy ; RNase H

Sažetak
Interactions of an array of nucleic acid structures with a small series of benzothiazole ligands (bis-benzothiazolyl-pyridines—group 1, 2- thienyl/2-benzothienyl-substituted 6-(2- imidazolinyl) benzothiazoles—group 2, and three 2- aryl/heteroaryl-substituted 6-(2- imidazolinyl)benzothiazoles—group 3) were screened by competition dialysis. Due to the involvement of DNA:RNA hybrids and triplex helices in many essential functions in cells, this study’s main aim is to detect benzothiazole based moieties with selective binding or spectroscopic response to these nucleic structures compared to regular (non- hybrid) DNA and RNA duplexes and single-stranded forms. Complexes of nucleic acids and benzothiazoles, selected by this method, were characterized by UV/Vis, fluorescence and circular dichroism (CD) spectroscopy, isothermal titration calorimetry, and molecular modeling. Two compounds (1 and 6) from groups 1 and 2 demonstrated the highest affinities against 13 nucleic acid structures, while another compound (5) from group 2, despite lower affinities, yielded higher selectivity among studied compounds. Compound 1 significantly inhibited RNase H. Compound 6 could differentiate between B- (binding of 6 dimers inside minor groove) and A- type (intercalation) helices by an induced CD signal, while both 5 and 6 selectively stabilized ATT triplex in regard to AT duplex. Compound 3 induced strong condensation-like changes in CD spectra of AT-rich DNA sequences.

Izvorni jezik
Engleski

Znanstvena područja
Kemija



POVEZANOST RADA


Projekti:
--IP-2018-01-4694 - Molekularno prepoznavanje DNA:RNA hibridnih i višelančanih struktura u bioanalitičkim i in vitro sustavima (DNARNAHyB-MolBio) (Radić Stojković, Marijana) ( CroRIS)

Ustanove:
Prehrambeno-biotehnološki fakultet, Zagreb,
Institut "Ruđer Bošković", Zagreb,
Tekstilno-tehnološki fakultet, Zagreb

Citiraj ovu publikaciju:

Zonjić, Iva; Tumir, Lidija-Marija; Crnolatac, Ivo; Šupljika, Filip; Racané, Livio; Tomić, Sanja; Radić Stojković, Marijana
Recognition of ATT Triplex and DNA:RNA Hybrid Structures by Benzothiazole Ligands // Biomolecules, 12 (2022), 3; 1600173, 20 doi:10.3390/biom12030374 (međunarodna recenzija, članak, znanstveni)
Zonjić, I., Tumir, L., Crnolatac, I., Šupljika, F., Racané, L., Tomić, S. & Radić Stojković, M. (2022) Recognition of ATT Triplex and DNA:RNA Hybrid Structures by Benzothiazole Ligands. Biomolecules, 12 (3), 1600173, 20 doi:10.3390/biom12030374.
@article{article, author = {Zonji\'{c}, Iva and Tumir, Lidija-Marija and Crnolatac, Ivo and \v{S}upljika, Filip and Racan\'{e}, Livio and Tomi\'{c}, Sanja and Radi\'{c} Stojkovi\'{c}, Marijana}, year = {2022}, pages = {20}, DOI = {10.3390/biom12030374}, chapter = {1600173}, keywords = {benzothiazoles, competition dialysis, DNA:RNA hybrids, ATT triplex, circular dichroism spectroscopy, RNase H}, journal = {Biomolecules}, doi = {10.3390/biom12030374}, volume = {12}, number = {3}, issn = {2218-273X}, title = {Recognition of ATT Triplex and DNA:RNA Hybrid Structures by Benzothiazole Ligands}, keyword = {benzothiazoles, competition dialysis, DNA:RNA hybrids, ATT triplex, circular dichroism spectroscopy, RNase H}, chapternumber = {1600173} }
@article{article, author = {Zonji\'{c}, Iva and Tumir, Lidija-Marija and Crnolatac, Ivo and \v{S}upljika, Filip and Racan\'{e}, Livio and Tomi\'{c}, Sanja and Radi\'{c} Stojkovi\'{c}, Marijana}, year = {2022}, pages = {20}, DOI = {10.3390/biom12030374}, chapter = {1600173}, keywords = {benzothiazoles, competition dialysis, DNA:RNA hybrids, ATT triplex, circular dichroism spectroscopy, RNase H}, journal = {Biomolecules}, doi = {10.3390/biom12030374}, volume = {12}, number = {3}, issn = {2218-273X}, title = {Recognition of ATT Triplex and DNA:RNA Hybrid Structures by Benzothiazole Ligands}, keyword = {benzothiazoles, competition dialysis, DNA:RNA hybrids, ATT triplex, circular dichroism spectroscopy, RNase H}, chapternumber = {1600173} }

Časopis indeksira:


  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


Citati:





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