Pregled bibliografske jedinice broj: 1092659
Analyses of wild ungulates mitogenome
Analyses of wild ungulates mitogenome // ACS - Agriculturae conspectus scientificus, 86 (2021), 1; 1-12 (međunarodna recenzija, pregledni rad, znanstveni)
CROSBI ID: 1092659 Za ispravke kontaktirajte CROSBI podršku putem web obrasca
Naslov
Analyses of wild ungulates mitogenome
Autori
Tešija, Toni ; Safner, Toni
Izvornik
ACS - Agriculturae conspectus scientificus (1331-7768) 86
(2021), 1;
1-12
Vrsta, podvrsta i kategorija rada
Radovi u časopisima, pregledni rad, znanstveni
Ključne riječi
mitochondrial DNA ; mitogenome ; mtDNA assembly ; mtDNA annotation ; wild ungulates ; phylogeny
Sažetak
In the last two decades, mitochondrial DNA (mtDNA) has become one of the most used genetic markers for studying evolution and phylogeny. Understanding mitochondrial genome (mitogenome) structure, gene arrangements, base compositions and noncoding regions can reveal valuable information on various organisms, including wild ungulates. A huge number of sequenced mammalian mitogenomes are available on GenBank, including 8074 mitogenome sequences of wild ungulates. The Next-Generation Sequencing (NGS) approach can reveal mitogenome regions that can explain the variation in populations. Such variations could show ungulates’ resistance to pathogens or processes of their adaptation. Despite the extensive number of new sequenced mitogenomes, there is still a lot of ambiguity around the mitogenome architecture. Methods for NGS, genome assembly and annotation are still in the process of development, aiming to make these tools powerful enough to reveal enormous knowledge crucial for assessing wild ungulate species’ conservation status, and their ecological status. In this review paper, we describe the methods and principles derived from mtDNA studies on wild ungulate species. We outline basic sequence preparation methods and specialized software for mitogenome assembly and annotation. Additionally, we present several different approaches of mitogenome comparison.
Izvorni jezik
Engleski
Znanstvena područja
Biologija, Biotehnologija u biomedicini (prirodno područje, biomedicina i zdravstvo, biotehničko područje)
POVEZANOST RADA
Projekti:
IP-2019-04-4096 - Uloga lova i lovnog gospodarenja u širenju novonastalih populacija divljih papkara na Mediteranu (MedUng) (Safner, Toni, HRZZ - 2019-04) ( CroRIS)
HRZZ-IP-2016-06-5751 - DNA kao dokaz o distribuciji i vitalnosti ugrožene balkanske divokoze (BalkCham) (Šprem, Nikica, HRZZ - 2016-06) ( CroRIS)
Ustanove:
Agronomski fakultet, Zagreb
Citiraj ovu publikaciju:
Časopis indeksira:
- Scopus