Pregled bibliografske jedinice broj: 1052820
Yet another de novo genome assembler
Yet another de novo genome assembler // 11th International Symposium on Image and Signal Processing and Analysis (ISPA 2019)
Dubrovnik, Hrvatska, 2019. str. 147-151 doi:10.1109/ISPA.2019.8868909 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), ostalo)
CROSBI ID: 1052820 Za ispravke kontaktirajte CROSBI podršku putem web obrasca
Naslov
Yet another de novo genome assembler
Autori
Vaser, Robert ; Šikić, Mile
Vrsta, podvrsta i kategorija rada
Radovi u zbornicima skupova, cjeloviti rad (in extenso), ostalo
Skup
11th International Symposium on Image and Signal Processing and Analysis (ISPA 2019)
Mjesto i datum
Dubrovnik, Hrvatska, 23.09.2019. - 25.09.2019
Vrsta sudjelovanja
Predavanje
Vrsta recenzije
Međunarodna recenzija
Ključne riječi
de novo genome assembly, long reads, read classification
Sažetak
Advances in sequencing technologies have pushed the limits of genome assemblies beyond imagination. The sheer amount of long read data that is being generated enables the assembly for even the largest and most complex organism for which efficient algorithms are needed. We present a new tool, called Ra, for de novo genome assembly of long uncorrected reads. It is a fast and memory friendly assembler based on sequence classification and assembly graphs, developed with large genomes in mind. It is freely available at https://github.com/lbcb-sci/ra.
Izvorni jezik
Engleski
Znanstvena područja
Računarstvo
POVEZANOST RADA
Projekti:
KK.01.1.1.01.0009 - Napredne metode i tehnologije u znanosti o podatcima i kooperativnim sustavima (EK )
HRZZ-UIP-2013-11-7353 - Algoritmi za analizu slijeda genoma (AGESA) (Šikić, Mile, HRZZ ) ( CroRIS)
HRZZ-IP-2018-01-5886 - De novo sastavljanje genoma i metagenoma (SIGMA) (Šikić, Mile, HRZZ ) ( CroRIS)
Ustanove:
Fakultet elektrotehnike i računarstva, Zagreb
