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1.The 5th Central European Conference - Chemistry towards Biology, Zagreb: Institut Ruđer Bošković, 2010 (zbornik)
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2.The 3rd Adriatic Meeting on Computational Solutions in Life Sciences : book of abstracts, Zagreb: Centre for Computational Solutions in the Life Sciences, 2009 (zbornik)
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3.The 2nd Opatija Meeting on Computational Solutions in Life Sciences : book of abstracts, Zagreb: Centre for Computational Solutions in the Life Sciences, 2007 (zbornik)
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1.Synthesis, QSAR, and molecular dynamics simulation of amidino-substituted benzimidazoles as dipeptidyl peptidase III inhibitors // Acta chimica Slovenica, 62 (2015), 4; 867-878 doi:10.17344/acsi.2015.1605 (međunarodna recenzija, članak, znanstveni)
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2.Human 3-hydroxyanthranilate 3, 4-dioxygenase (3HAO) dynamics and reaction, a multilevel computational study // Molecular biosystems, 11 (2015), 3; 898-907 doi:10.1039/C4MB00668B (međunarodna recenzija, članak, znanstveni)
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3.Sensing of Double-Stranded DNA/RNA Secondary Structures by Water Soluble Homochiral Perylene Bisimide Dyes // Chemistry - A European Journal, 21 (2015), 21; 7886-7895 doi:10.1002/chem.201500184 (međunarodna recenzija, članak, znanstveni)
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4.Aryl-bis-(scorpiand)-aza receptors differentiate between nucleotide monophosphates by combination of aromatic, hydrogen bond and electrostatic interactions // Organic & biomolecular chemistry, 13 (2015), 1732-1740 doi:10.1039/c4ob02084g (međunarodna recenzija, članak, znanstveni)
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5.Homooligomerization is needed for stability: a molecular modelling and solution study of E. coli purine nucleoside phosphorylase // The FEBS journal, 281 (2014), 7; 1860-1871 doi:10.1111/febs.12746 (međunarodna recenzija, članak, znanstveni)
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6.Computational study of the structural plasticity and the ligand binding affinity of the IRES subdomain IIa // Molecular biosystems, 10 (2014), 12; 3272-3279 doi:10.1039/c4mb00469h (međunarodna recenzija, članak, znanstveni)
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7.Hunting the human DPP III active conformation : combined thermodynamic and QM/MM calculations // Dalton transactions, 43 (2014), 15503-15514 doi:10.1039/C4DT02003K (međunarodna recenzija, članak, znanstveni)
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8.Importance of the three basic residues in the vicinity of the zinc-binding motives for the activity of the yeast dipeptidyl peptidase III // Journal of biochemistry, 155 (2014), 1; 43-50 doi:10.1093/jb/mvt093 (međunarodna recenzija, članak, znanstveni)
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9.Anilides and quinolones with nitrogen-bearing substituents from benzothiophene- and thienothiophene- series: synthesis, photochemical synthesis, cytostatic evaluation, 3D-derived QSAR analysis and DNA-binding properties // European journal of medicinal chemistry, 71 (2014), 267-281 doi:10.1016/j.ejmech.2013.11.010 (međunarodna recenzija, članak, znanstveni)
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10.A single amino acid substitution affects the substrate specificity of the seryl-tRNA synthetase homologue // Molecular biosystems, 10 (2014), 12; 3207-3216 doi:10.1039/C4MB00416G (međunarodna recenzija, članak, znanstveni)
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11.Why does the coordination mode of physiological bis(L-histidinato)copper(II) differ in the gas phase, crystal lattice and aqueous solutions? A quantum chemical study // European journal of inorganic chemistry, 17 (2014), 1; 198-212 doi:10.1002/ejic.201300746 (međunarodna recenzija, članak, znanstveni)
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12.Dibenzotetraaza[14]annulene – adenine conjugate recognizes complementary poly dT among ss-DNA / ss-RNA sequences // Organic & biomolecular chemistry, 11 (2013), 24; 4077-4085 doi:10.1039/c3ob40519b (međunarodna recenzija, članak, znanstveni)
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13.The bis-phenanthridinium system flexibility and position of covalently bound uracil finely tunes the interaction with polynucleotides // Molecular biosystems, 9 (2013), 8; 2051-2062 doi:10.1039/C3MB25578F (međunarodna recenzija, članak, znanstveni)
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14.Synthesis and alkali metal complexation studies of novel cage-functionalized cryptands // Tetrahedron, 69 (2013), 49; 10610-10620 doi:10.1016/j.tet.2013.10.039 (međunarodna recenzija, članak, znanstveni)
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15.Kinetic differentiation between homo- and alternating AT-DNA by sterically restricted phosphonium dyes // Chemistry : a European journal, 18 (2012), 13; 3859-3864 doi:10.1002/chem.201102968 (međunarodna recenzija, članak, znanstveni)
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16.Chromatography, mass spectrometry, and molecular modeling studies on ammodytoxins // Analytical and bioanalytical chemistry, 402 (2012), 9; 2737-2748 doi:10.1007/s00216-012-5754-8 (međunarodna recenzija, članak, znanstveni)
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17.Nucleation of Ligand-Receptor Domains in Membrane Adhesion // Physical review letters, 109 (2012), 25; 258101, 5 doi:10.1103/PhysRevLett.109.258101 (međunarodna recenzija, članak, znanstveni)
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18.Coexistence of dilute and densely packed domains of ligand-receptor bonds in membrane adhesion // Europhysics Letters, 99 (2012), 3; 38003-1 doi:10.1209/0295-5075/99/38003 (međunarodna recenzija, pismo, znanstveni)
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19.Modeling triple conformational disorder in a new crystal polymorph of cis-aquabis(L-isoleucinato)copper(II) // Crystal growth & design, 12 (2012), 8; 4116-4129 doi:10.1021/cg300636w (međunarodna recenzija, članak, znanstveni)
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20.BioMe : biologically relevant metals // Nucleic acids research, 40 (2012), W352-W357 doi:10.1093/nar/gks514 (međunarodna recenzija, članak, znanstveni)
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21.The large scale conformational change of the human DPP III – substrate prefers the "closed" form // Journal of chemical information and modeling, 52 (2012), 6; 1583-1594 doi:10.1021/ci300141k (međunarodna recenzija, članak, znanstveni)
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22.Novel Substituted Benzothiophene- and Thienothiophene-carboxanilides and quinolones : Synthesis, Photochemical Synthesis, DNA–binding Properties, Antitumor evaluation and 3D-derived QSAR analysis // Journal of medicinal chemistry, 55 (2012), 11; 5044-5060 doi:10.1021/jm300505h (međunarodna recenzija, članak, znanstveni)
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23.Alkali metal ion complexation of adamantane functionalized diaza-bibracchial lariat ethers // Croatica chemica acta, 85 (2012), 4; 559-568 doi:10.5562/cca2100 (međunarodna recenzija, članak, znanstveni)
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24.Dke1 – Structure, Dynamics and Function, A Theoretical and Experimental Study Elucidated the Role of the Binding Site Shape and the H-Bonding Network in Catalysis // Journal of biological inorganic chemistry, 17 (2012), 5; 801-815 doi:10.1007/s00775-012-0898-8 (međunarodna recenzija, članak, znanstveni)
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25.Synthesis and biological validation of novel pyrazole derivatives with anticancer activity guided by 3D-QSAR analysis // Bioorganic & medicinal chemistry, 20 (2012), 6; 2101-2110 doi:10.1016/j.bmc.2012.01.032 (međunarodna recenzija, članak, znanstveni)
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26.Human Dipeptidyl Peptidase III: Insights into Ligand Binding from a Combined Experimental and Computational Approach // Journal of molecular recognition, 24 (2011), 5; 804-814 doi:10.1002/jmr.1115 (međunarodna recenzija, članak, znanstveni)
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27.Guanidiniocarbonyl-pyrrole-aryl conjugates as nucleic acid sensors: switch of binding mode and spectroscopic responses by introducing additional binding sites into the linker // Organic & biomolecular chemistry, 9 (2011), 1; 198-209 doi:10.1039/C0OB00103A (međunarodna recenzija, članak, znanstveni)
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28.Combined Experimental and Computational Study of cis-trans Isomerism in Bis(L-valinato)copper(II) // Inorganic chemistry, 50 (2011), 8; 3632-3644 doi:10.1021/ic102585f (međunarodna recenzija, članak, znanstveni)
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29.Mechanism and thermodynamics of ligand binding to auxin amidohydrolase // Journal of molecular recognition, 24 (2011), 5; 854-861 doi:10.1002/jmr.1128 (međunarodna recenzija, članak, znanstveni)
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30.Human Dipeptidyl Peptidase III : the Role of Asn406 in Ligand Binding and Hydrolysis // Croatica chemica acta, 84 (2011), 2; 259-268 doi:10.5562/cca1808 (međunarodna recenzija, članak, znanstveni)
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31.Two intertwined facets of adherent membranes : Membrane roughness and correlations between ligand-receptors bonds // New journal of physics, 13 (2011), 025003-1 doi:10.1088/1367-2630/13/2/025003 (međunarodna recenzija, članak, znanstveni)
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32.Inter-membrane adhesion mediated by mobile linkers : Effect of receptor shortage // Soft matter, 7 (2011), 3; 952-962 (međunarodna recenzija, članak, znanstveni)
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33.Switching from Ultraweak to Strong Adhesion // Advanced materials, 23 (2011), 2622-2626 doi:10.1002/adma.201004097 (međunarodna recenzija, članak, znanstveni)
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34.The interactions of bis-phenanthridinium – nucleobase conjugates with nucleotides: adenine conjugate recognizes UMP in aqueous medium // Tetrahedron, 66 (2010), 13; 2501-2513 doi:10.1016/j.tet.2010.01.063 (međunarodna recenzija, članak, znanstveni)
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35.Physics challenged by cells // Nature Physics, 6 (2010), 10; 726-729 doi:10.1038/nphys1798 (međunarodna recenzija, članak, znanstveni)
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36.Inferring spatial organization of bonds within adhesion clusters by exploiting fluctuations of soft interfaces // Europhysics Letters, 89 (2010), 2; 28003-1 doi:10.1209/0295-5075/89/28003 (međunarodna recenzija, članak, znanstveni)
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37.Computational Study of the DNA-Binding Protein Helicobacter pylori NikR: The Role of Ni2+ // Journal of chemical theory and computation, 6 (2010), 11; 3503-3515 doi:10.1021/ct900635z (međunarodna recenzija, članak, znanstveni)
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38.Systematic comparison of crystal and NMR protein structures deposited in the protein data bank // The open biochemistry journal, 4 (2010), 83-95 doi:10.2174/1874091X01004010083 (podatak o recenziji nije dostupan, članak, znanstveni)
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39.QSAR analysis of antitumor active amides and quinolones from thiophene series // International journal of pharmaceutics, 394 (2010), 1-2; 106-114 doi:10.1016/j.ijpharm.2010.05.014 (međunarodna recenzija, članak, znanstveni)
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40.Pyrazolone-fused combretastatins and their precursors : synthesis, cytotoxicity, antitubulin activity and molecular modeling studies // Bioorganic & medicinal chemistry, 18 (2010), 7; 2375-2387 doi:10.1016/j.bmc.2010.03.006 (međunarodna recenzija, članak, znanstveni)
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41.Novel Cyano- and Amidino- Benzothiazole Derivatives: Synthesis, Antitumor Evaluation, X-ray and QSAR Analysis // Journal of medicinal chemistry, 52 (2009), 6; 1744-1756 doi:10.1021/jm801566q (međunarodna recenzija, članak, znanstveni)
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42.Auxin amidohydrolases from Brassica rapa cleave the alanine conjugate of indolepropionic acid as a preferable substrate: a biochemical and modeling approach // Plant and cell physiology, 50 (2009), 9; 1587-1599 doi:10.1093/pcp/pcp101 (međunarodna recenzija, članak, znanstveni)
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43.Progress in mimetic studies of cell adhesion and the mechanosensing // ChemPhysChem, 10 (2009), 1; 66-78 doi:10.1002/cphc.200800683 (međunarodna recenzija, članak, znanstveni)
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44.Structure Prediction of Bis(amino acidato)copper(II) Complexes with a New Force Field for Molecular Modeling // Journal of Chemical Theory and Computation, 5 (2009), 7; 1940-1954 doi:10.1021/ct9000203 (međunarodna recenzija, članak, znanstveni)
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45.Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests // Plos computational biology, 5 (2009), 1; e1000278-1 doi:10.1371/journal.pcbi.1000278 (međunarodna recenzija, članak, znanstveni)
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46.Influence of the Rigid Spacer to Macrocyclization of Poly(thialactones): Synthesis and Computational Analysis // Journal of physical organic chemistry, 22 (2009), 5; 431-437 doi:10.1002/poc.1479 (međunarodna recenzija, članak, znanstveni)
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47.Combined X-Ray Diffraction and QM/MM Study of the Burkholderia cepacia Lipase-Catalyzed Secondary Alcohol Esterification // Journal of Physical Chemistry B, 112 (2008), 16; 4876-4883 doi:10.1021/jp077717u (međunarodna recenzija, članak, znanstveni)
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48.A novel pyrene-guanidiniocarbonyl-pyrrole cation efficiently differentiates between ds-DNA and ds-RNA by two independent, sensitive spectroscopic methods // Bioorganic & Medicinal Chemistry Letters, 18 (2008), 2977-2981 doi:10.1016/j.bmcl.2008.03.060 (međunarodna recenzija, članak, znanstveni)
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49.Mechanism of Auxin Interaction with Auxin Binding Protein (ABP1): A Molecular Dynamics Simulation Study // Biophysical Journal, 94 (2008), 1; 27-37 (međunarodna recenzija, članak, znanstveni)
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50.The effect of hydrogen bonding in two crystal modifications of aquabis(N, N-dimethylglycinato-
N, // Inorganica Chimica Acta, 361 (2008), 8; 2424-2436 doi:10.1016/j.ica.2007.12.016 (međunarodna recenzija, članak, znanstveni)O)copper(II): experimental and theoretical study -
51.Dynamics of Specific Vesicle-Substrate Adhesion : From Local Events to Global Dynamics // Physical Review Letters, 101 (2008), 20; 208103-1 doi:10.1103/PhysRevLett.101.208103 (međunarodna recenzija, članak, znanstveni)
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52.Force-induced growth of adhesion domains is controlled by receptor mobility // Proceedings of the National Academy of Sciences of the United States of America, 105 (2008), 19; 6906-6911 doi:10.1073/pnas.0801706105 (međunarodna recenzija, članak, znanstveni)
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53.PSAIA - Protein Structure and Interaction Analyzer // Bmc structural biology, 8 (2008) doi::10.1186/1472-6807-8-21 (međunarodna recenzija, članak, znanstveni)
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54.Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination // Acta Crystallographica Section D - Biological Crystallography, 64 (2008), 3; 257-263 doi:10.1107/S090744490706595X (međunarodna recenzija, članak, znanstveni)
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55.COMBINE Analysis of the Specificity of Binding of Ras Proteins to their Effectors // Proteins Structure, Function, and Bioinformatics, 67 (2007), 2; 435-447 (međunarodna recenzija, članak, znanstveni)
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56.The Effects of Steric Aliphatic-Aliphatic Interactions in the Coordination Polymer of Bis(N, N-diethylglycinato)copper(II): Experimental Evidence and Theoretical Modeling // Polyhedron, 26 (2007), 5; 1087-1097 (međunarodna recenzija, članak, znanstveni)
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57.Binding behavior of amino acid conjugates of indole-3-acetic acid to immobilized human serum albumin // Journal of Chromatography. A, 1154 (2007), 1-2; 240-249 (međunarodna recenzija, članak, znanstveni)
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58.Vesicles as a model for controlled (de-)adhesion of cells: a thermodynamic approach // Soft Matter, 3 (2007), 3; 275-289 (međunarodna recenzija, članak, znanstveni)
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59.Adhesion of Giant Vesicles Mediated by Weak Binding of Sialyl-LewisX to E-Selectin in the Presence of Repelling Poly(ethylene glycol) Molecules // Langmuir, 23 (2007), 24; 12293-12300 doi:10.1021/la701824q (međunarodna recenzija, članak, znanstveni)
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1.Nobelova nagrada za kemiju za 2013. godinu // Kemija u industriji : časopis kemičara i tehnologa Hrvatske, 62 (2013), 11-12; 468-471 (podatak o recenziji nije dostupan, osvrt, stručni)
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2.Molecular Mechanics (MM) Force Fields for Modelling of Copper(II) Amino Acid Complexes in Different Environments // AIP conference proceedings, 1102 (2009), 1; 193-199 doi:10.1063/1.3108374 (podatak o recenziji nije dostupan, conference paper, znanstveni)
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1.Identifying protein flexibility by NMA // Proceedings of the 2008 International Conference on Bioinformatics & Computational Biology / Arabnia, Hamid R. (ur.).
Las Vegas, SAD, 2008. str. 927-933 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni) -
2.The protein secondary structure flexibility // Proceedings of the 2008 International Conference on Bioinformatics & Computational Biology / Arabnia, Hamid R. (ur.).
Las Vegas, SAD, 2008. str. 918-926 (predavanje, međunarodna recenzija, cjeloviti rad (in extenso), znanstveni) -
1.Život modeliran vodom // Fizikalni aspekti vode / Darko Androić (ur.).
Zagreb: PMF-Zagreb, 2008. str. 50-57 (pozvano predavanje, domaća recenzija, cjeloviti rad (in extenso), stručni) -
1.Proteini i nukleinske kiseline u vremenu i prostoru // Bioinformatics and biological physics: proceedings of the scientific meeting / Paar, Vladimir (ur.).
Zagreb: Hrvatska akademija znanosti i umjetnosti, 2013. str. 149-157 (pozvano predavanje, domaća recenzija, cjeloviti rad (in extenso), ostalo) -
2.Sprega kristalografije i modeliranja u proučavanju bioloških makromolekula // Kristalografija u Hrvatskoj / Popović Stanko (ur.).
Zagreb: Hrvatska akademija znanosti i umjetnosti, 2013. str. 129-137 (predavanje, domaća recenzija, cjeloviti rad (in extenso), ostalo) -
1.Computational study of the IRES subdomain IIa structural plasticity and the ligand binding affinity // Chemistry towards Biology 7th Central European Conference - Book of Abstracts / Jarzembek, Krystyna (ur.) (ur.).
Katowice, Poljska, 2014. str. P10-P10 (poster, međunarodna recenzija, sažetak, znanstveni) -
2.Najnovija saznanja o koordinaciji cinka i o vezanju liganda u aktivno mjesto humane DPP III – implikacije na mehanizam kemijske reakcije // XXIII. hrvatski skup kemičara i kemijskih inženjera, knjiga sažetaka / Hadžiev, Andrea ; Blažeković, Zdenko (ur.).
Zagreb: HDKI/Kemija u industriji, 2013. str. 177-177 (poster, domaća recenzija, sažetak, znanstveni) -
3.Molecular Mechanics - Poisson Boltzmann Surface Area calculations using AMBER program package - application to the human dipeptidyl petidase III // Computational Electrostatics for Biological Applications - Book of Abstract
Genova, Italija, 2013. str. 39-39 (poster, međunarodna recenzija, sažetak, znanstveni) -
4.Elucidation of metal ion-binding sites in proteins // 6th Central Europe Conference - Abstracts of scientific contributions / Roberto Rizzo (ur.).
Trst, Italija: Universita degli studi di Trieste, 2013. str. oc15-oc15 (predavanje, međunarodna recenzija, sažetak, znanstveni) -
5.Non-heme iron dependent enzymes – understanding transport of iron cation in acetylacetone dioxygenase from Acinetobacter johnsoii // European Biophys. J. Volume 42 Supplement 1, '9th European Biophysics Congress Abstracts' / Watts, A. (ur.).
Heidelberg, Njemačka: Springer, 2013. str. S184-S184 (poster, međunarodna recenzija, sažetak, znanstveni) -
6.Modeling of noncovalent interactions and self-assembly of cis- and trans-bis(L-alaninato)copper(II) in aqueous solution // ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY VOLUME 245 / AMER. CHEMICAL SOC. (ur.).
New Orleans: AMER CHEMICAL SOC, 1155 16TH ST, NW, WASHINGTON, DC 20036 USA, 2013. str. PHYS-396 (poster, međunarodna recenzija, sažetak, znanstveni) -
7.Further study of the zinc coordination in the active site of the human DPP III - ONIOM calculations // Book of abstracts, 11th Greta Pifat-Mrzljak International School of Biophysics, Biomolecular complexes and assemblies / Hozić A., Vuletić T. (ur.).
Zagreb: Institut Ruđer Bošković i Hrvatsko biofizičko društvo, 2012. str. 104-104 (poster, međunarodna recenzija, sažetak, znanstveni) -
8.Synthesis, Antitumor Activity and QSAR Analysis of Heterocyclic Amides and Quinolones // ISMC 2012 XXIInd International Symposium on Medicinal Chemistry, Book of Abstracts / Ortuzar, Natalia (ur.).
Weinheim, 2012. str. 250-251 (poster, međunarodna recenzija, sažetak, znanstveni) -
9.QM/MM račun koordinacije cinka u aktivnom mjestu humane DPP III / QM/MM study of the zinc coordination in the active site of the human DPP III // Knjiga sažetaka - IX. Susret mladih kemijskih inženjera / Martinez, Sanja (ur.).
Zagreb: Hrvatsko društvo kemijskih inženjera i tehnologa, 2012. str. 173-173 (poster, domaća recenzija, sažetak, znanstveni) -
10.Molecular modeling of nucleic acid - small molecule interactions // Book of Abstracts Regional Biophysical Conference 2012 / Zakrzewska, Joanna, Živić, Miroslav, Andjus, Pavle (ur.).
Beograd, Srbija: Društvo biofizičara Srbije, 2012. str. 13-13 (pozvano predavanje, međunarodna recenzija, sažetak, znanstveni) -
11.Molecular modeling of new permanently charged phenanthridinium-nucleobase conjugates in complexes with double stranded polynucleotides // Ninth Triennial Congress of the World Association ot Theoretical and Computational Chemists - Book of Abstracts / Yáñez, Manuel ; Mó, Otilia (ur.).
Santiago de Compostela, 2011. (poster, sažetak, znanstveni) -
12.MD simulations showed large conformational changes of the human free DPP III // Book of Abstracts - The Conference on Molecular Simulations in Biosystems and Material Science
Konstanz, 2011. str. 72-72 (poster, međunarodna recenzija, sažetak, znanstveni) -
13.Investigation of anticancer activity of heterocyclic amides and quinolones using 3D-QSAR analysis // Ninth Triennial Congress of the World Association ot Theoretical and Computational Chemists / Yáñez, Manuel ; Mó, Otilia (ur.).
Santiago de Compostela, 2011. (poster, međunarodna recenzija, sažetak, znanstveni) -
14.Step Forward in Understanding Mechanism of Non-heme Fe2+ Dependent Dioxyhenase Dke1 Catalysis // Book of Abstract
Santiago de Compostela, Španjolska, 2011. str. 1-1 (predavanje, međunarodna recenzija, sažetak, znanstveni) -
15.Molecular modeling in crystalline surroundings and single-crystal X-ray diffraction of trans and cis bis(L-valinato)copper(II) crystal and molecular structures // Book of Abstracts and Program, 10th International Symposium and Summer School on Bioanalysis / Matković-Čalogović, Dubravka ; Milić, Dalibor ; Prugovečki, Biserka ; Galić, Nives (ur.).
Zagreb, 2010. str. 61-61 (predavanje, međunarodna recenzija, sažetak, znanstveni) -
16.Ligand binding to human DPP III and its mutant H568N - computational analyses // Abstracts of the 6th International Workshop on New Approaches in Drug Design & Discovery "The Interactions :From Atom-Atom Contacts to Networks in System Biology" / Klebe, Gerhard ; Matter, Hans ; Sotriffer, Hans (ur.).
Marburg: University of Marburg, 2010. str. 87-87 (poster, međunarodna recenzija, sažetak, znanstveni) -
17.QSAR analysis and proposal of new heterocyclic compounds with potential antitumor activity // The 5th Central European Conference - Chemistry towards Biology
Zagreb: IRB, 2010. str. 66-66 (poster, međunarodna recenzija, sažetak, znanstveni) -
18.Molecular modeling of crystallization processes of trans and cis bis(L-valinato)copper(II) from aqueous solution // Book Of Abstracts, The 5th Central European Conference – Chemistry towards Biology / Abramić, Marija ; Maksić, Zvonimir, Salopek-Sondi, Branka ; Tomić, Sanja ; Vianello, Robert (ur.).
Zagreb: Ruđer Bošković Institute, 2010. str. 101-101 (poster, međunarodna recenzija, sažetak, znanstveni) -
19.Molecular modelling of phosphonium cyanine dyes in complex with DNA // Book of Abstracts of the The 5th Central European Conference - Chemistry towards Biology
Zagreb: IRB, 2010. (poster, sažetak, znanstveni) -
20.Interaction of phosphonium cyanine dyes with DNA // Abstracts of the Fourth Humboldt Conference on Computational Chemistry / Petrova, P. Galina ; Vayssilov, N. Georgie (ur.).
Sofia, 2010. (poster, sažetak, znanstveni) -
21.Bisphenanthridinium-nucleobase conjugates – molecular modelling and spectroscopic approach // Book of Abstracts of the EMBO Young Scientists Forum
Zagreb, 2009. (poster, sažetak, ostalo) -
22.MM calculations of unit cell packings of aquabis(L-valinato)copper(II) in simulated crystal lattice // EMBO Young Scientists Forum Book of Abstracts
Zagreb, Hrvatska, 2009. str. 37-37 (poster, međunarodna recenzija, sažetak, znanstveni) -
23.Auxin amidohydrolases from Brassica rapa cleave conjugates of indole propionic and indole butyric acid as preferable substrates: A biochemical and modeling approach // ACPD 2009, Auxins and Cytokinins in Plant Development, Book of Abstracts
Prag, 2009. str. 22-22 (predavanje, međunarodna recenzija, sažetak, znanstveni) -
24.Computational and spectroscopic studies of intercalators and their interaction with nucleotides // Book of Abstracts of The third Adriatic Meeting on computational Solutions in the Life Sciences
Zagreb: IRB, 2009. (poster, sažetak, ostalo) -
25.Can the MD simulations of solvated trans and cis bis(L-valinato)copper(II) molecules in aqueous solution reveal the reasons for crystallisation of specific conformers? // Book Of Abstracts, The 3rd Adriatic Meeting on Computational Solutions in the Life Sciences / Tomić, Sanja (ur.).
Zagreb: Centre for Computational Solutions in the Life Sciences, Ruđer Bošković Institute, 2009. str. 66-66 (poster, međunarodna recenzija, sažetak, znanstveni) -
26.Molecular modelling of copper(II) complexes with histidine // Book of Abstracts, Tenth International Summer School on Biophysics Supramolecular structure and function / Pifat-Mrzljak, Greta ; Zahradka, Ksenija (ur.).
Zagreb: Ruđer Bošković Institute, 2009. str. 132-132 (poster, međunarodna recenzija, sažetak, znanstveni) -
27.Computational approach to specificity of intercalators toward nucleotides // Book of Abstracts of the Tenth international summer school on biophysics - supramolecular structure and function
Rovinj, 2009. (poster, sažetak, ostalo) -
28.Molecular modelling of bisphenanthridinium- nucleobase conjugates // Book of Abstracts of the MATH/CHEM/COMP - The Dubrovnik International Course on the Interfaces among Mathematics, Chemistry and Computer Sciences / A. Graovac, B. Pokrić, V. Smrečki (ur.).
Zagreb: IRB, 2008. (poster, sažetak, ostalo) -
29.Characterization of the Brassica rapa auxin amido-hydrolase, BrILL2 // Physiologia Plantarum, Special Issue, 133 (3) / Vaughan, Hurry (ur.).
Oxford: Blackwell Publishing, 2008. str. P01-065 (poster, međunarodna recenzija, sažetak, znanstveni) -
30.BrILL2, auksin amidohidrolaza iz kineskog kupusa (Brassica rapa L.) // Zbornik sažetaka / Zahradka, Ksenija ; Plohl, Miroslav ; Ambriović-Ristov, Andreja (ur.).
Zagreb: Institut Ruđer Bošković, 2008. str. 74-74 (poster, domaća recenzija, sažetak, znanstveni) -
31.Combined 3D QSAR and QM/MM Study of the Burkholderia cepacia Lipase Enantioselectivity // Protein Design and Evolution for Biocatalysis, Book of Abstracts
Sant Feliu de Guixols, Španjolska, 2008. (predavanje, sažetak, ostalo) -
32.Influence of the rigid spacer to macrocyclization of poly(thialactones): Synthesis and computational analysis // IUPAC Conference Santiago de Compostela
Santiago de Compostela, Španjolska, 2008. (predavanje, međunarodna recenzija, sažetak, znanstveni) -
33.Modelling Structural Properties of Bis(glycinato)copper(II) in Aqueous Solution // Proceedings of the Eighth Triennial Congress of the World Association of Theoretical and Computational Chemists (WATOC 2008) / Jordan, Meredith (ur.).
Sydney, Australija: World Association of Theoretical and Computational Chemists, 2008. str. PP139-PP139 (poster, međunarodna recenzija, sažetak, znanstveni) -
34.Development of Molecular Mechanics (MM) Force Fields for Modelling of Copper(II) Amino Acid Complexes in Different Environments // The International Conference on Theory and Applications of Computational Chemistry – TACC 2008, Šangaj, Kina 2008. Book of Programme and Abstract for TACC2008 / Wei, Dongqing (ur.).
Šangaj, Kina: Shanghai Jiao Tong University, IASIA, 2008. str. 156-157 (pozvano predavanje, međunarodna recenzija, sažetak, znanstveni) -
35.Insight into structure and function of the plant enzyme, auxin amido-hydrolase // Book of abstracts of the HDBMB 2008 / Strelec, Ivica ; Glavaš-Obrovac, Ljubica (ur.).
Osijek: Croatian Society of Biochemistry and Molecular Biology, 2008. str. 130-130 (poster, međunarodna recenzija, sažetak, znanstveni) -
36.Force field based methods for computational study of macromolecules // Hottest Topics in Protein Research : Book of abstracts
Zagreb, 2008. str. 7-8 (pozvano predavanje, sažetak, znanstveni) -
37.Towards understanding enentio-selective enzyme catalysed chemical transformation of pro-drugs // Abstracts book / Tsantili-Kakoulidou, Anna (ur.).
Atena: University of Athens, 2008. str. 35-35 (predavanje, sažetak, ostalo) -
38.QM/MM Study of the Burkholderia cepacia Lipase Catalyzed Secondary Alcohol Esterification // Book of Abstracts - The Conference on Molecular Simulations in Biosystems and Material Science / Nielabla, P. (ur.).
Konstanz: Universitaet Konstanz, 2008. str. 92-92 (poster, sažetak, ostalo) -
39.Molecular modelling of bisphenanthridinium- nucleobase conjugates // Book of Abstracts of the International Conference and Biophysics Summmer School From Solid State to Biophysics IV / L. Forro, D. Pavuna (ur.).
Switzerland: EPFL, 2008. (poster, sažetak, ostalo) -
40.Non covalent interactions in protein complexes // Humboldt Conference On Noncovalent Interactions / Snezana Zaric (ur.).
Vršac, Srbija: AvH, 2007. str. 12-12 (pozvano predavanje, sažetak, znanstveni) -
41.Computational simulations of ABP1 and its interactions with auxin-related molecules // The 2th Opatija Meeting on Computational Solutions in the Life Sciences / Babić, Darko ; Došlić, Nađa ; David, Smith ; Tomić, Sanja ; Kristijan, Vlahovićek (ur.).
Zagreb: Institut Ruđer Bošković, 2007. str. 30-30 (predavanje, sažetak, znanstveni) -
42.Koreliranje oblika površine i hidrofobnosti proteina korištenjem razvoja u kugline funkcije // Book of abstracts, The 2nd Opatija Meeting on Computational Solutions in the Life Sciences / Babić, Darko ; Došlić, Nađa ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.).
Zagreb: Ruđer Bošković Institute, 2007. str. 69-69 (poster, međunarodna recenzija, sažetak, znanstveni) -
43.COMBINE Analysis of Interactions Between Ras Proteins and Their Effectors // 6th AFMC INTERNACIONAL MEDICAL CHEMISTRY SYMPOSIUM / Prous, J. R. (ur.).
Barcelona, Spain: Prous science, 2007. str. 79-79 (poster, međunarodna recenzija, sažetak, ostalo) -
44.Divalent metal cations in proteins: abundance, coordination, function // Book of Abstracts: 16th CROATIAN-SLOVENIAN CRYSTALLOGRAPHIC MEETING
Zagreb: HAZU, 2007. (predavanje, sažetak, znanstveni) -
45.The Modelling of Noncovalent Interactions in the Crystal Structures of bis(L-valinato)copper (II) // Humboldt Conference on Noncovalent Interactions : Book of Abstracts / Zarić, Snežana (ur.).
Vršac, Srbija, 2007. str. 58-58 (poster, međunarodna recenzija, sažetak, znanstveni) -
46.Non Covalent Interactions In Protein Complexes // BOOK OF ABSTRACT: Humboldt Conference On Noncovalent Interactions / Zarić S. (ur.).
Vršac, Srbija, 2007. (pozvano predavanje, sažetak, znanstveni) -
47.Proučavanje međudjelovanja proteina korištenjem računala // Knjiga sažetaka 5. znanstvenog sastanka Hrvatskog fizikalnog društva
Zagreb, 2007. (poster, sažetak, znanstveni) -
48.Modelling Structural Properties of Copper(II) Amino Acid Complexes in Different Environments // Book of Abstracts of the 2nd Opatija Meeting on Computational Solutions inthe Life Sciences / Babić, Darko (ur.).
Zagreb: Ruđer Bošković Institute, 2007. str. 39-39 (pozvano predavanje, međunarodna recenzija, sažetak, znanstveni) -
49.The protein-protein interactions - molecular modelling study // Central European Symposium on Theoretical Chemistry
Litschau, Austria, 2007. (predavanje, sažetak, ostalo) -
50.Conformational analysis of bis(L-isoleucinato)copper(II) and bis(L-valinato)copper(II) // Book Of Abstracts, The 2nd Opatija Meeting on Computational Solutions in the Life Sciences / Tomić, Sanja (ur.).
Zagreb: Centre for Computational Solutions in the Life Sciences, Ruđer Bošković Institute, Zagreb, 2007. str. 77-77 (poster, međunarodna recenzija, sažetak, znanstveni) -
51.The protein-protein interactions- molecular modelling study // 6th Central European Symposium on Theoretical Chemistry - Book of Abstracts / Anne-Marie Kelterer (ur.).
Graz: TU-Graz, 2007. str. L12-L12 (predavanje, sažetak, ostalo) -
1.Molecular dynamics based studies on human DPP III revealed determinants for its broad substrate selectivity // IRENE – 'In Silico Enzyme Sesign and Screening'
Trst, Italija, 2012. (predavanje, međunarodna recenzija, sažetak, znanstveni) -
2.Influence of The Hydrophobic Residues on The Dke1 Activity // Molecular Simulations in Biosystems and Material Science (SimBioMa)
Konstanz, Njemačka, 2011. str. 1-1 (poster, međunarodna recenzija, sažetak, znanstveni) -
1.Proučavanje o željezu ovisnih dioksigenaza računalnim metodama 2014., doktorska disertacija, Prirodoslovno matematički Fakultet, Fizički odsjek, Zagreb
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2.Eksperimentalno utemeljeno modeliranje interakcija nukleinskih kiselina i malih molekula 2014., doktorska disertacija, Prirodoslovno-matematički fakultet, Zagreb
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3.Algoritmi za utvrđivanje fleksibilnosti proteina na temelju konformacije i fizikalnih svojstava proteina 2008., doktorska disertacija, Fakultet elektrotehnike i računarstva, Zagreb
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4.Računalna metoda za predviđanje mjesta proteinskih interakcija 2008., doktorska disertacija, Fakultet elektrotehnike i računarstva, Zagreb
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5.MODELIRANJE AUKSINSKIH MOLEKULA I NJIHOVE INTERAKCIJE S VEZNIM PROTEINOM – ABP 1 2007., doktorska disertacija, Prirodoslovno-matematički fakultet, Zagreb
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1.Poboljšani algoritam za izbor i provjeru kvalitete najboljih multivarijacijskih modela odnosa strukture i svojstava molekula 2011., magistarski rad, Fakultet elektrotehnike i računarstva, Zagreb
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1.Računalna metoda za računanje proteinskih interakcija 2013., diplomski rad, diplomski, Fakultet elektrotehnike i računarstva, Zagreb
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2.BioMe - web sučelje baze biološki važnih metala 2012., diplomski rad, diplomski, Fakultet elektrotehnike i računarstva, Zagreb
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3.Implementacija algoritma za računanje proteinskih interakcija 2011., diplomski rad, preddiplomski, Fakultet elektrotehnike i računarstva, Zagreb
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4.Predviđanje površine dostupne otapalu iz slijeda aminokiselinskih ostataka 2011., diplomski rad, Fakultet Elektrotehnike i računarstva, Zagreb
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5.Alat za prianjanje proteina: modul za vizualizaciju 2011., diplomski rad, diplomski, Fakultet elektrotehnike i računarstva, Zagreb
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6.Multiresolution analysis of macromolecular structures 2010., diplomski rad, diplomski, Fakultet elektrotehnike i računarstva, Zagreb
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7.Alat za prianjanje proteina: modul za pripremu prianjanja 2010., diplomski rad, preddiplomski, Fakultet Elektrotehnike i računarstva, Zagreb
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8.Predviđanje mjesta sekundarne strukture protein iz slijeda aminokiselinskih ostataka 2010., diplomski rad, Fakultet Elektrotehnike i računarstva, Zagreb
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9.Baza podataka metala u proteinima 2010., diplomski rad, preddiplomski, Fakultet elektrotehnike i računarstva, Zagreb
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10.Alat za prianjanje proteina: modul za utvrđivanje interakcija 2010., diplomski rad, diplomski, Fakultet Elektrotehnike i računarstva, Zagreb
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11.Alat za prianjanje proteina: moduli za rotaciju i vrednovanje rezultata 2010., diplomski rad, diplomski, Fakultet elektrotehike i računarstva, Zagreb
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12.THERMODYNAMICS OF LIGAND BINDING TO AUXIN AMIDOHYDROLASE 2010., diplomski rad, diplomski, PMF - kemija, Zagreb
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13.Vizualizacija makromolekula 2008., diplomski rad, preddiplomski, Fakultet elektrotehnike i računarstva, Zagreb