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izvor podataka: crosbi

Molecular evolution and invasion pattern of Cryphonectria hypovirus 1 in Europe: Mutation rate, and selection pressure differ between genome domains (CROSBI ID 246420)

Prilog u časopisu | izvorni znanstveni rad | međunarodna recenzija

Mlinarec, Jelena ; Nuskern, Lucija ; Ježić, Marin ; Rigling, Daniel ; Ćurković-Perica, Mirna Molecular evolution and invasion pattern of Cryphonectria hypovirus 1 in Europe: Mutation rate, and selection pressure differ between genome domains // Virology (New York, N.Y.), 514 (2018), 156-164. doi: 10.1016/j.virol.2017.11.011

Podaci o odgovornosti

Mlinarec, Jelena ; Nuskern, Lucija ; Ježić, Marin ; Rigling, Daniel ; Ćurković-Perica, Mirna

engleski

Molecular evolution and invasion pattern of Cryphonectria hypovirus 1 in Europe: Mutation rate, and selection pressure differ between genome domains

Understanding virus evolution is a fundamental goal of virology, evolutionary biology, and disease epidemiology. We provide a detailed analysis of evolution and origin of Cryphonectria hypovirus 1 (CHV1) populations in Europe, based on the complete genome sequence of all European subtypes. Phylogenetic analyses divided European strains into two closely related clades. Strains of the subtype I belong to the first, while strains of the subtypes F1, D and E belong to the second clade suggesting that the subtypes F1, D and E are more closely related than previously thought. Strains of the subtype F2 appeared to be recombinant ; subtypes F1/D/E contributed a larger fraction of sequence while subtype I contributed a smaller fraction. The p29 was the most variable domain, while the replication- associated large ORF B protein was the most conserved domain within the CHV1. Low sequence similarity, predominant negative selection and frequent recombination characterise the evolution of CHV1.

Biological control ; Chestnut blight ; CHV1 ; Evolution ; Host parasite interactions ; Invasive species ; Mycoviruses ; Recombination

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Podaci o izdanju

514

2018.

156-164

objavljeno

0042-6822

10.1016/j.virol.2017.11.011

Povezanost rada

Biologija

Poveznice
Indeksiranost