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Pregled bibliografske jedinice broj: 915059

Ra – Rapid de novo genome assembler


Vaser, Robert; Šikić, Mile
Ra – Rapid de novo genome assembler // ISMB/ECCB 2017
Prague, Češka Republika, 2017. str. 1-1 (poster, međunarodna recenzija, sažetak, znanstveni)


CROSBI ID: 915059 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
Ra – Rapid de novo genome assembler

Autori
Vaser, Robert ; Šikić, Mile

Vrsta, podvrsta i kategorija rada
Sažeci sa skupova, sažetak, znanstveni

Izvornik
ISMB/ECCB 2017 / - , 2017, 1-1

Skup
ISMB/ECCB 2017

Mjesto i datum
Prague, Češka Republika, 21-25.7.2017

Vrsta sudjelovanja
Poster

Vrsta recenzije
Međunarodna recenzija

Ključne riječi
de novo assembly, long reads

Sažetak
Ra is a novel de novo genome assembler based on the Overlap-Layout-Consensus paradigm tailored for reads produced by third generation sequencing platforms. It integrates previously developed Minimap overlap (Li, 2016), Racon consensus (Vaser et al, 2017) tools and a newly developed layout module Rala into one package. Omitting time consuming error correction in the preprocessing step enables fast genome assembly while keeping high accuracy levels. The achieved results on several read datasets generated by the Pacific Biosciences sequencing platforms are comparable with those of similar de novo assemblers Hinge (Kamath et al, 2017) and Miniasm+Racon in contiguity, accuracy and running time.

Izvorni jezik
Engleski

Znanstvena područja
Biologija, Računarstvo



POVEZANOST RADA


Ustanove:
Fakultet elektrotehnike i računarstva, Zagreb

Profili:

Avatar Url Mile Šikić (autor)

Avatar Url Robert Vaser (autor)


Citiraj ovu publikaciju

Vaser, Robert; Šikić, Mile
Ra – Rapid de novo genome assembler // ISMB/ECCB 2017
Prague, Češka Republika, 2017. str. 1-1 (poster, međunarodna recenzija, sažetak, znanstveni)
Vaser, R. & Šikić, M. (2017) Ra – Rapid de novo genome assembler. U: ISMB/ECCB 2017.
@article{article, year = {2017}, pages = {1-1}, keywords = {de novo assembly, long reads}, title = {Ra – Rapid de novo genome assembler}, keyword = {de novo assembly, long reads}, publisherplace = {Prague, \v{C}e\v{s}ka Republika} }
@article{article, year = {2017}, pages = {1-1}, keywords = {de novo assembly, long reads}, title = {Ra – Rapid de novo genome assembler}, keyword = {de novo assembly, long reads}, publisherplace = {Prague, \v{C}e\v{s}ka Republika} }




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