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Pregled bibliografske jedinice broj: 891925

Assessment of holographic microscopy for quantifying marine particles


Walcutt, Noah; Omand, Melissa; Knörlein, Benjamin; Sgouros, Tom; Cetinić, Ivona; Neeley, Aimee; Ljubešić, Zrinka; Bosak, Sunčica
Assessment of holographic microscopy for quantifying marine particles // Ocean Carbon and Biogeochemistry (OCB) Summer Workshop, Poster abstracts
Massachusetts, SAD, 2017. str. 49-50 (poster, nije recenziran, neobjavljeni rad, znanstveni)


CROSBI ID: 891925 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
Assessment of holographic microscopy for quantifying marine particles

Autori
Walcutt, Noah ; Omand, Melissa ; Knörlein, Benjamin ; Sgouros, Tom ; Cetinić, Ivona ; Neeley, Aimee ; Ljubešić, Zrinka ; Bosak, Sunčica

Vrsta, podvrsta i kategorija rada
Sažeci sa skupova, neobjavljeni rad, znanstveni

Izvornik
Ocean Carbon and Biogeochemistry (OCB) Summer Workshop, Poster abstracts / - , 2017, 49-50

Skup
Ocean Carbon and Biogeochemistry (OCB) Summer Workshop

Mjesto i datum
Massachusetts, SAD, 26-29.06.2017

Vrsta sudjelovanja
Poster

Vrsta recenzije
Nije recenziran

Ključne riječi
phytoplankton, hographic microscope, method comparisson

Sažetak
Characterizing marine snow and phytoplankton communities in sparse, highly variable oceanic environments remains a methodological challenge. In situ holography may help to address this challenge by sampling 100x larger volumes than comparable objective lens-based systems, and is easily deployable on CTD- rosette, flow-through, and autonomous systems. Qualitatively, detected particle counts show good agreement with beam attenuation down to depths of 1000m (the depth rating of our autonomous system). Here, the quantitative capability of a digital in-line holographic microscope to evaluate abundance, size and type of particles ranging from 5 to 1000 micron equivalent spherical diameter, is assessed. Over one million particles are analyzed using a custom image processing pipeline, which allows a precise definition of the three-dimensional volume sampled. Experiments were performed on dilutions of Dunaliella culture and with environmental samples collected from the North Pacific in February 2017 and compared with concentration estimates from an Imaging FlowCytobot, FlowCam, and manual light microscope counts. The good correlation (r2 = 0.92, P < 0.05) with these other detection methods suggests that digital holography is a promising tool for in situ and autonomous studies of ocean biogeochemical cycling and phytoplankton ecology.

Izvorni jezik
Engleski

Znanstvena područja
Biologija



POVEZANOST RADA


Projekti:
HRZZ-UIP-2013-11-6433 - Bioindikatori vodenih masa u Jadranu (BIOTA) (Ljubešić, Zrinka, HRZZ - 2013-11) ( POIROT)

Ustanove:
Prirodoslovno-matematički fakultet, Zagreb

Profili:

Avatar Url Sunčica Bosak (autor)

Avatar Url Ivona Cetinić (autor)

Avatar Url Zrinka Ljubešić (autor)

Citiraj ovu publikaciju

Walcutt, Noah; Omand, Melissa; Knörlein, Benjamin; Sgouros, Tom; Cetinić, Ivona; Neeley, Aimee; Ljubešić, Zrinka; Bosak, Sunčica
Assessment of holographic microscopy for quantifying marine particles // Ocean Carbon and Biogeochemistry (OCB) Summer Workshop, Poster abstracts
Massachusetts, SAD, 2017. str. 49-50 (poster, nije recenziran, neobjavljeni rad, znanstveni)
Walcutt, N., Omand, M., Knörlein, B., Sgouros, T., Cetinić, I., Neeley, A., Ljubešić, Z. & Bosak, S. (2017) Assessment of holographic microscopy for quantifying marine particles. U: Ocean Carbon and Biogeochemistry (OCB) Summer Workshop, Poster abstracts.
@article{article, year = {2017}, pages = {49-50}, keywords = {phytoplankton, hographic microscope, method comparisson}, title = {Assessment of holographic microscopy for quantifying marine particles}, keyword = {phytoplankton, hographic microscope, method comparisson}, publisherplace = {Massachusetts, SAD} }
@article{article, year = {2017}, pages = {49-50}, keywords = {phytoplankton, hographic microscope, method comparisson}, title = {Assessment of holographic microscopy for quantifying marine particles}, keyword = {phytoplankton, hographic microscope, method comparisson}, publisherplace = {Massachusetts, SAD} }




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