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Pregled bibliografske jedinice broj: 879883

RNA Transcriptome Mapping with GraphMap


Križanović, Krešimir; Sović, Ivan; Krpelnik, Ivan; Šikić, Mile
RNA Transcriptome Mapping with GraphMap // Bioinformatics Research and Applications 13th International Symposium, ISBRA 2017 / Cai, Zhipeng ; Daescu, Ovidiu ; Li, Min (ur.).
USA, Honolulu: Springer, 2017. str. XXIX-XXX (predavanje, međunarodna recenzija, sažetak, znanstveni)


CROSBI ID: 879883 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
RNA Transcriptome Mapping with GraphMap

Autori
Križanović, Krešimir ; Sović, Ivan ; Krpelnik, Ivan ; Šikić, Mile

Vrsta, podvrsta i kategorija rada
Sažeci sa skupova, sažetak, znanstveni

Izvornik
Bioinformatics Research and Applications 13th International Symposium, ISBRA 2017 / Cai, Zhipeng ; Daescu, Ovidiu ; Li, Min - : Springer, 2017, XXIX-XXX

ISBN
978-3-319-59574-0

Skup
13th International Symposium, ISBRA 2017

Mjesto i datum
USA, Honolulu, 29.5.2017. - 2.6.2017

Vrsta sudjelovanja
Predavanje

Vrsta recenzije
Međunarodna recenzija

Ključne riječi
RNA, transcriptome, Gene annotations, RNA alignment

Sažetak
In recent years, 3rd generation sequencing technologies have matured and are slowly replacing NGS for DNA sequencing. Since long read length is very important for RNA sequencing and most RNA mapping tools are still designed to work with short and accurate NGS reads, the application of 3rd generation technologies to RNA sequencing is still rare. In this paper we present a simple modification to a known DNA alignment tool designed for 3rd generation sequencing data that enables it to be used for RNA mapping. The results achieved surpass other available tools.

Izvorni jezik
Engleski

Znanstvena područja
Računarstvo, Biotehnologija



POVEZANOST RADA


Ustanove
Fakultet elektrotehnike i računarstva, Zagreb

Profili:

Avatar Url Krešimir Križanović (autor)

Avatar Url Mile Šikić (autor)

Avatar Url Ivan Sović (autor)

Citiraj ovu publikaciju

Križanović, Krešimir; Sović, Ivan; Krpelnik, Ivan; Šikić, Mile
RNA Transcriptome Mapping with GraphMap // Bioinformatics Research and Applications 13th International Symposium, ISBRA 2017 / Cai, Zhipeng ; Daescu, Ovidiu ; Li, Min (ur.).
USA, Honolulu: Springer, 2017. str. XXIX-XXX (predavanje, međunarodna recenzija, sažetak, znanstveni)
Križanović, K., Sović, I., Krpelnik, I. & Šikić, M. (2017) RNA Transcriptome Mapping with GraphMap. U: Cai, Z., Daescu, O. & Li, M. (ur.)Bioinformatics Research and Applications 13th International Symposium, ISBRA 2017.
@article{article, year = {2017}, pages = {XXIX-XXX}, keywords = {RNA, transcriptome, Gene annotations, RNA alignment}, isbn = {978-3-319-59574-0}, title = {RNA Transcriptome Mapping with GraphMap}, keyword = {RNA, transcriptome, Gene annotations, RNA alignment}, publisher = {Springer}, publisherplace = {USA, Honolulu} }

Časopis indeksira:


  • Scopus