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A Nexus between Theory and Experiment: Non-Empirical Quantum Mechanical Computational Methodology Applied to Cucurbit[n]uril·Guest Binding Interactions


Hostaš, Jiří; Sigwalt, David; Šekutor, Marina; Ajani, Haresh; Dubecký, Matúš; Řezáč, Jan; Zavalij, Peter Y.; Cao, Liping; Wohlschlager, Christian; Mlinarić-Majerski, Kata et al.
A Nexus between Theory and Experiment: Non-Empirical Quantum Mechanical Computational Methodology Applied to Cucurbit[n]uril·Guest Binding Interactions // Chemistry : a European journal, 22 (2016), 48; 17226-17238 doi:10.1002/chem.201601833 (međunarodna recenzija, članak, znanstveni)


Naslov
A Nexus between Theory and Experiment: Non-Empirical Quantum Mechanical Computational Methodology Applied to Cucurbit[n]uril·Guest Binding Interactions

Autori
Hostaš, Jiří ; Sigwalt, David ; Šekutor, Marina ; Ajani, Haresh ; Dubecký, Matúš ; Řezáč, Jan ; Zavalij, Peter Y. ; Cao, Liping ; Wohlschlager, Christian ; Mlinarić-Majerski, Kata ; Isaacs, Lyle ; Glaser, Robert ; Hobza, Pavel

Izvornik
Chemistry : a European journal (0947-6539) 22 (2016), 48; 17226-17238

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
Adamantane-/diamantane-skeleton guests ; biomimetic complexes ; BLYP-D3 quantum mechanical calculations ; cucurbit[n]uril ; host–guest complexes ; primary ammonium loops

Sažetak
A training set of eleven X-ray structures determined for biomimetic complexes between cucurbit[n]uril (CB[7 or 8]) hosts and adamantane-/diamantane ammonium/aminium guests were studied with DFT-D3 quantum mechanical computational methods to afford ΔGcalcd binding energies. A novel feature of this work is that the fidelity of the BLYP-D3/def2-TZVPP choice of DFT functional was proven by comparison with more accurate methods. For the first time, the CB[n]⋅guest complex binding energy subcomponents [for example, ΔEdispersion, ΔEelectrostatic, ΔGsolvation, binding entropy (−TΔS), and induced fit Edeformation(host), Edeformation(guest)] were calculated. Only a few weeks of computation time per complex were required by using this protocol. The deformation (stiffness) and solvation properties (with emphasis on cavity desolvation) of cucurbit[n]uril (n=5, 6, 7, 8) isolated host molecules were also explored by means of the DFT-D3 method. A high ρ2=0.84 correlation coefficient between ΔGexptl and ΔGcalcd was achieved without any scaling of the calculated terms (at 298 K). This linear dependence was utilized for ΔGcalcd predictions of new complexes. The nature of binding, including the role of high energy water molecules, was also studied. The utility of introduction of tethered [-(CH2)nNH3]+ amino loops attached to N, N-dimethyl-adamantane-1-amine and N, N, N′, N′-tetramethyl diamantane-4, 9-diamine skeletons (both from an experimental and a theoretical perspective) is presented here as a promising tool for the achievement of new ultra-high binding guests to CB[7] hosts. Predictions of not yet measured equilibrium constants are presented herein.

Izvorni jezik
Engleski

Znanstvena područja
Kemija

Napomena
Znanstveni projekt HAZU - Diamantoidni amini – novi ligandi u supramolekulskim sustavima ; voditelj: Marina Šekutor



POVEZANOST RADA


Projekt / tema
098-0982933-2911 - Kavezasti spojevi: ugradbene jedinice u molekularnim sustavima (Kata Majerski, )
HAZU

Ustanove
Institut "Ruđer Bošković", Zagreb,
Hrvatska akademija znanosti i umjetnosti

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • Arts & Humanities Citation Index (A&HCI)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


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