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Validation of flavonoids as potential dipeptidyl peptidase III inhibitors: experimental and computational approach


Agić, Dejan; Brkić, Hrvoje; Tomić, Sanja; Karačić, Zrinka; Špoljarević, Marija; Lisjak, MIroslav; Bešlo, Drago; Abramić, Marija
Validation of flavonoids as potential dipeptidyl peptidase III inhibitors: experimental and computational approach // Chemical biology & drug design, 89 (2017), 4; 619-627 doi:10.1111/cbdd.12887 (međunarodna recenzija, članak, znanstveni)


Naslov
Validation of flavonoids as potential dipeptidyl peptidase III inhibitors: experimental and computational approach

Autori
Agić, Dejan ; Brkić, Hrvoje ; Tomić, Sanja ; Karačić, Zrinka ; Špoljarević, Marija ; Lisjak, MIroslav ; Bešlo, Drago ; Abramić, Marija

Izvornik
Chemical biology & drug design (1747-0277) 89 (2017), 4; 619-627

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
Protease and Ligands (Substrate/Inhibitor) ; Molecul ar Modeling ; Drug Design

Sažetak
Fifteen flavonoids were studied for their inhibitory activity against human dipeptidyl peptidase III (hDPP III) combining an in vitro assay with an in silico molecular modeling study. All analyzed flavonoids showed inhibitory effects against hDPP III with the IC50 values ranging from 22.0 to 437.2 μM. Our 3D QSAR studies indicate that the presence of hydrophilic regions at a flavonoid molecule increases its inhibitory activity while the higher percentage of hydrophobic surfaces have negative impact on enzyme inhibition. Furthermore, molecular dynamics (MD) simulations of the complex of hDPPIII with one of the most potent inhibitors, luteolin, were performed and binding mode analysis revealed that the 3' and 4' hydroxyl group on B-ring as well as 5 and 7 hydroxyl group on A-ring helps luteolin to interact with the Asn391, Asn406, Tyr417, His450, Glu451, Val447, Glu512, Asn545, Gln566 and Arg572 residues. The MD results clearly provide valuable information explaining the importance of flavonoid hydroxyl groups in the mechanism for the binding pattern at the active site of hDPP III.

Izvorni jezik
Engleski

Znanstvena područja
Fizika, Biologija



POVEZANOST RADA


Projekt / tema
HRZZ-IP-2013-11-7235 - Povezanost fleksibilnosti, aktivnosti i strukture u porodici dipeptidil-peptidaza III (Sanja Tomić, )

Ustanove
Fakultet agrobiotehničkih znanosti Osijek,
Institut "Ruđer Bošković", Zagreb,
Medicinski fakultet, Osijek

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • Arts & Humanities Citation Index (A&HCI)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


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