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Real-Time Analysis of a Metagenomic Sample Obtained by Nanopore Based Sequencing Technology

Fast and cheap metagenomic sample analysis could be very useful for medical diagnosis, food quality control and discovering harmful parasites on plants. Traditional laboratory methods are either long-lasting or oriented towards a single pathogen species. MinION sequencing devices by Oxford Nanopore Technologies are relatively cheap and suitable for application in the field. We developed a tool which in the first step discovers all organisms whose sequence have high similarity to the reads obtained from the samples and after that determines the organisms present in the sample.

metagenomics; diagnostics; treatment

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