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Pregled bibliografske jedinice broj: 810332

Whole-exome sequencing in an isolated population from the Dalmatian island of Vis.


Jerončić, Ana; Memari, Yasin; Ritchie Graham; Hendricks AE; Kolb-Kokocinski, Anja; Matchan A; Vitart, Veronique; Hayward, Caroline; Kolčić, Ivana; Glodzik, Dominik, Wright, Alan et al.
Whole-exome sequencing in an isolated population from the Dalmatian island of Vis. // European journal of human genetics, 48 (2016), 23-23 doi:10.1038/ejhg.2016.23 (međunarodna recenzija, članak, znanstveni)


Naslov
Whole-exome sequencing in an isolated population from the Dalmatian island of Vis.

Autori
Jerončić, Ana ; Memari, Yasin ; Ritchie Graham ; Hendricks AE ; Kolb-Kokocinski, Anja ; Matchan A ; Vitart, Veronique ; Hayward, Caroline ; Kolčić, Ivana ; Glodzik, Dominik, Wright, Alan ; Rudan, Igor ; Campbell, Harry ; Durbin, Richard ; Polašek, Ozren ; Zeggini, Eleftheria ; Boraska Perica, Vesna

Izvornik
European journal of human genetics (1018-4813) 48 (2016); 23-23

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
Exome ; sequence ; isolated

Sažetak
We have whole-exome sequenced 176 individuals from the isolated population of the island of Vis in Croatia in order to describe exonic variation architecture. We found 290 577 single nucleotide variants (SNVs), 65% of which are singletons, low frequency or rare variants. A total of 25 430 (9%) SNVs are novel, previously not catalogued in NHLBI GO Exome Sequencing Project, UK10K-Generation Scotland, 1000Genomes Project, ExAC or NCBI Reference Assembly dbSNP. The majority of these variants (76%) are singletons. Comparable to data obtained from UK10K-Generation Scotland that were sequenced and analysed using the same protocols, we detected an enrichment of potentially damaging variants (non-synonymous and loss-of-function) in the low frequency and common variant categories. On average 115 (range 93-140) genotypes with loss-of-function variants, 23 (15-34) of which were homozygous, were identified per person. The landscape of loss- of-function variants across an exome revealed that variants mainly accumulated in genes on the xenobiotic-related pathways, of which majority coded for enzymes. The frequency of loss-of-function variants was additionally increased in Vis runs of homozygosity regions where variants mainly affected signalling pathways. This work confirms the isolate status of Vis population by means of whole-exome sequence and reveals the pattern of loss-of- function mutations, which resembles the trails of adaptive evolution that were found in other species. By cataloguing the exomic variants and describing the allelic structure of the Vis population, this study will serve as a valuable resource for future genetic studies of human diseases, population genetics and evolution in this population.

Izvorni jezik
Engleski

Znanstvena područja
Temeljne medicinske znanosti, Javno zdravstvo i zdravstvena zaštita



POVEZANOST RADA


Projekt / tema
216-1080315-0302 - Odrednice zdravlja i bolesti u općoj i izoliranim ljudskim populacijama (Ozren Polašek, )
HRZZ-IP-2013-11-8875 - Pleitropija, genske mreže i putevi u izoliranim ljudskim populacijama: 10.001 Dalmatinac (Ozren Polašek, )
HRZZ-PD-02.03/68 - Analiza i interpretacija cjelogenomskih studija povezanosti: primjena u projektu 10,001 Dalmatinac (Vesna Boraska, )

Ustanove
Medicinski fakultet, Split

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


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