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Pregled bibliografske jedinice broj: 748510

The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development


Lardenois, Aurelie; Stuparević, Igor; Liu, Yuchen; Law, Michael; Becker, Emmanuelle; Smagulova, Fatima; Waern, Karl; Guilleux, Marie- Helene; Horecka, Joe; Chu, Angela et al.
The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development // Nucleic acids research, 43 (2015), 1; 115-128 doi:10.1093/nar/gku1185 (međunarodna recenzija, članak, znanstveni)


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Naslov
The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development

Autori
Lardenois, Aurelie ; Stuparević, Igor ; Liu, Yuchen ; Law, Michael ; Becker, Emmanuelle ; Smagulova, Fatima ; Waern, Karl ; Guilleux, Marie- Helene ; Horecka, Joe ; Chu, Angela ; Kervarrec, Christine ; Strich, Randy ; Snyder, Mike ; Davis, Ronald ; Steinmetz, Lars ; Primig, Michael

Izvornik
Nucleic acids research (0305-1048) 43 (2015), 1; 115-128

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
Meiosis; UTRs; Rpd3; Ume6; transcript isoforms

Sažetak
It was recently reported that the sizes of many mRNAs change when budding yeast cells exit mitosis and enter the meiotic differentiation pathway. These differences were attributed to length variations of their untranslated regions. The function of UTRs in protein translation is well established. However, the mechanism controlling the expression of distinct transcript isoforms during mitotic growth and meiotic development is unknown. In this study, we order developmentally regulated transcript isoforms according to their expression at specific stages during meiosis and gametogenesis, as compared to vegetative growth and starvation. We employ regulatory motif prediction, in vivo protein-DNA binding assays, genetic analyses and monitoring of epigenetic amino acid modification patterns to identify a novel role for Rpd3 and Ume6, two components of a histone deacetylase complex already known to repress early meiosis-specific genes in dividing cells, in mitotic repression of meiosis-specific transcript isoforms. Our findings classify developmental stage-specific early, middle and late meiotic transcript isoforms, and they point to a novel HDAC- dependent control mechanism for flexible transcript architecture during cell growth and differentiation. Since Rpd3 is highly conserved and ubiquitously expressed in many tissues, our results are likely relevant for development and disease in higher eukaryotes.

Izvorni jezik
Engleski

Znanstvena područja
Kemija, Biologija, Biotehnologija



POVEZANOST RADA


Ustanove:
Prehrambeno-biotehnološki fakultet, Zagreb

Profili:

Avatar Url Igor Stuparević (autor)

Poveznice na cjeloviti tekst rada:

doi nar.oxfordjournals.org

Citiraj ovu publikaciju:

Lardenois, Aurelie; Stuparević, Igor; Liu, Yuchen; Law, Michael; Becker, Emmanuelle; Smagulova, Fatima; Waern, Karl; Guilleux, Marie- Helene; Horecka, Joe; Chu, Angela et al.
The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development // Nucleic acids research, 43 (2015), 1; 115-128 doi:10.1093/nar/gku1185 (međunarodna recenzija, članak, znanstveni)
Lardenois, A., Stuparević, I., Liu, Y., Law, M., Becker, E., Smagulova, F., Waern, K., Guilleux, M., Horecka, J. & Chu, A. (2015) The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development. Nucleic acids research, 43 (1), 115-128 doi:10.1093/nar/gku1185.
@article{article, year = {2015}, pages = {115-128}, DOI = {10.1093/nar/gku1185}, keywords = {Meiosis, UTRs, Rpd3, Ume6, transcript isoforms}, journal = {Nucleic acids research}, doi = {10.1093/nar/gku1185}, volume = {43}, number = {1}, issn = {0305-1048}, title = {The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development}, keyword = {Meiosis, UTRs, Rpd3, Ume6, transcript isoforms} }
@article{article, year = {2015}, pages = {115-128}, DOI = {10.1093/nar/gku1185}, keywords = {Meiosis, UTRs, Rpd3, Ume6, transcript isoforms}, journal = {Nucleic acids research}, doi = {10.1093/nar/gku1185}, volume = {43}, number = {1}, issn = {0305-1048}, title = {The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development}, keyword = {Meiosis, UTRs, Rpd3, Ume6, transcript isoforms} }

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


Uključenost u ostale bibliografske baze podataka::


  • MEDLINE


Citati:





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