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Empirical Kernel Map Approach to Nonlinear Underdetermined Blind Separation of Sparse Nonnegative Dependent Sources: Pure Components Extraction from Nonlinear Mixtures Mass Spectra (CROSBI ID 209049)

Prilog u časopisu | izvorni znanstveni rad | međunarodna recenzija

Kopriva, Ivica ; Jerić, Ivanka ; Filipović, Marko ; Brkljačić, Lidija Empirical Kernel Map Approach to Nonlinear Underdetermined Blind Separation of Sparse Nonnegative Dependent Sources: Pure Components Extraction from Nonlinear Mixtures Mass Spectra // Journal of chemometrics, 28 (2014), 9; 704-715. doi: 10.1002/cem.2635

Podaci o odgovornosti

Kopriva, Ivica ; Jerić, Ivanka ; Filipović, Marko ; Brkljačić, Lidija

engleski

Empirical Kernel Map Approach to Nonlinear Underdetermined Blind Separation of Sparse Nonnegative Dependent Sources: Pure Components Extraction from Nonlinear Mixtures Mass Spectra

Nonlinear underdetermined blind separation of nonnegative dependent sources consists in decomposing set of observed nonlinearly mixed signals into greater number of original nonnegative and dependent component (source) signals. That hard problem is practically relevant for contemporary metabolic profiling of biological samples, where sources (a.k.a. pure components or analytes) are aimed to be extracted from mass spectra of nonlinear multicomponent mixtures. This paper presents method for nonlinear underdetermined blind separation of nonnegative dependent sources that comply with sparse probabilistic model, i.e. sources are constrained to be sparse in support and amplitude. That model is validated on experimental pure components mass spectra. Under sparse prior nonlinear problem is converted into equivalent linear one comprised of original sources and their higher-, mostly second, order monomials. Influence of these monomials, that stand for error terms, is reduced by preprocessing matrix of mixtures by means of robust principal component analysis, hard-, soft- and trimmed thresholding. Preprocessed data matrices are mapped in high-dimensional reproducible kernel Hilbert space (RKHS) of functions by means of empirical kernel map. Sparseness constrained nonnegative matrix factorizations (NMF) in RKHS yield sets of separated components. They are assigned to pure components from the library using maximal correlation criterion. The methodology is exemplified on demanding numerical and experimental examples related respectively to extraction of 8 dependent components from 3 nonlinear mixtures and to extraction of 25 dependent analytes from 9 nonlinear mixtures mass spectra recorded in nonlinear chemical reaction of peptide synthesis.

Nonlinear underdetermined blind source separation; Robust principal component analysis; Thresholding; Empirical kernel maps; Nonnegative matrix factorization

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Podaci o izdanju

28 (9)

2014.

704-715

objavljeno

0886-9383

1099-128X

10.1002/cem.2635

Povezanost rada

Kemija, Računarstvo, Matematika

Poveznice