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Pregled bibliografske jedinice broj: 705278

Effect of descriptor selection before splitting and method of splitting (rational and random) on external predictive ability and on behaviour of different statistical parameters of QSAR model


Masand, Vijay H.; Mahajan, Devidas T.; Nazeruddin, Gulam M.; Hadda, Taibi Ben; Rastija, Vesna; Alfeefy, Ahmed M.
Effect of descriptor selection before splitting and method of splitting (rational and random) on external predictive ability and on behaviour of different statistical parameters of QSAR model // Medicinal chemistry research, 24 (2015), 3; 1241-1264 doi:10.1007/s00044-014-1193-8 (međunarodna recenzija, članak, znanstveni)


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Naslov
Effect of descriptor selection before splitting and method of splitting (rational and random) on external predictive ability and on behaviour of different statistical parameters of QSAR model

Autori
Masand, Vijay H. ; Mahajan, Devidas T. ; Nazeruddin, Gulam M. ; Hadda, Taibi Ben ; Rastija, Vesna ; Alfeefy, Ahmed M.

Izvornik
Medicinal chemistry research (1054-2523) 24 (2015), 3; 1241-1264

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
QSAR ; external validation ; statistical parameters ; splitting methods ; predictivity

Sažetak
Quantitative Structure-Activity Relationship not only provides guidelines regarding structural features responsible for biological activity but it can be used also for prediction of desired activity prior to synthesis of untested chemicals. Therefore, an appropriate validation of any QSAR is of utmost importance to judge its external predictive ability. Generally, internal and external validations (preferred by many) are used in the absence of a true external data set. The model developed using external method may not be reliable as it may not capture all essential features required for the particular SAR due to omission of some compounds, especially for small data sets. In external validation, the splitting is done either rationally or in random manner. In the present study, rational splitting of data set was performed using a novel method and its effect on statistical parameters was observed. The analysis reveals that the predictive ability of a QSAR model is sensitive towards (1) method of splitting and (2) distribution of training and test sets. In addition, purposeful selection can be used to influence the statistical parameters ; therefore, external validation based on single split is insufficient to guarantee the true predictive ability of a QSAR model. Besides, it appears that the selection of descriptors prior to splitting has little role to play in deciding external predictivity of the model. The present study reveals that as many as possible statistical parameters should be examined along with boot-strapping instead of single external validation.

Izvorni jezik
Engleski

Znanstvena područja
Kemija, Farmacija



POVEZANOST RADA


Ustanove
Fakultet agrobiotehničkih znanosti Osijek

Profili:

Avatar Url Vesna Rastija (autor)

Citiraj ovu publikaciju

Masand, Vijay H.; Mahajan, Devidas T.; Nazeruddin, Gulam M.; Hadda, Taibi Ben; Rastija, Vesna; Alfeefy, Ahmed M.
Effect of descriptor selection before splitting and method of splitting (rational and random) on external predictive ability and on behaviour of different statistical parameters of QSAR model // Medicinal chemistry research, 24 (2015), 3; 1241-1264 doi:10.1007/s00044-014-1193-8 (međunarodna recenzija, članak, znanstveni)
Masand, V., Mahajan, D., Nazeruddin, G., Hadda, T., Rastija, V. & Alfeefy, A. (2015) Effect of descriptor selection before splitting and method of splitting (rational and random) on external predictive ability and on behaviour of different statistical parameters of QSAR model. Medicinal chemistry research, 24 (3), 1241-1264 doi:10.1007/s00044-014-1193-8.
@article{article, year = {2015}, pages = {1241-1264}, DOI = {10.1007/s00044-014-1193-8}, keywords = {QSAR, external validation, statistical parameters, splitting methods, predictivity}, journal = {Medicinal chemistry research}, doi = {10.1007/s00044-014-1193-8}, volume = {24}, number = {3}, issn = {1054-2523}, title = {Effect of descriptor selection before splitting and method of splitting (rational and random) on external predictive ability and on behaviour of different statistical parameters of QSAR model}, keyword = {QSAR, external validation, statistical parameters, splitting methods, predictivity} }

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus


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  • CA Search (Chemical Abstracts)


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