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Pregled bibliografske jedinice broj: 687913

High-throughput discrimination of bacteria isolated from Astacus astacus and A. leptodactylus


Topić Popović, Natalija; Sauerborn Klobučar, Roberta; Maguire, Ivana; Strunjak-Perović, Ivančica; Kazazić, Snježana; Barišić, Josip; Jadan, Margita; Klobučar, Goran Igor Vinko; Čož-Rakovac, Rozelinda
High-throughput discrimination of bacteria isolated from Astacus astacus and A. leptodactylus // Knowledge and Management of Aquatic Ecosystems, (2014), 413; 04-1 doi:10.1051/kmae/2014005 (međunarodna recenzija, članak, znanstveni)


CROSBI ID: 687913 Za ispravke kontaktirajte CROSBI podršku putem web obrasca

Naslov
High-throughput discrimination of bacteria isolated from Astacus astacus and A. leptodactylus

Autori
Topić Popović, Natalija ; Sauerborn Klobučar, Roberta ; Maguire, Ivana ; Strunjak-Perović, Ivančica ; Kazazić, Snježana ; Barišić, Josip ; Jadan, Margita ; Klobučar, Goran Igor Vinko ; Čož-Rakovac, Rozelinda

Izvornik
Knowledge and Management of Aquatic Ecosystems (1961-9502) (2014), 413; 04-1

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
crayfish; bacteria; MALDI-TOF MS; API 20E

Sažetak
Bacterial diseases and pathogens of crayfish are common, widespread, and occasionally causing serious mortalities. In order to take rapid measures for correct treatment of crayfish diseases, the turnover time and accuracy in bacterial identification is an issue. Bacteria isolated from tissues of apparently healthy Astacus astacus and A. leptodactylus were identified by the commercial phenotypic tests (API 20E) and by the matrix assisted laser induced desorption ionization connected to the time of flight mass spectrometry (MALDI-TOF MS). For Gram-negative rods, API 20E resulted in fewer species identifications than MALDI-TOF MS (5.2% versus 52.61%). The most frequently identified genus from A. astacus and A. leptodactylus was Pseudomonas spp.: API 20E (47.82%) and MALDI-TOF MS (52.17%). Both systems identified 60.86% of total isolates identically to the genus. Hafnia alvei was the only isolate for which API 20E and MALDI-TOF MS had a concordant reading to the species. MALDI-TOF MS proved to be a powerful, low-cost, rapid tool in bacterial genus identification. This is the first report of a direct comparison between the two systems for the identification of bacteria in crayfish, and also the first report on using MALDI-TOF MS for discrimination of freshwater crayfish bacterial isolates.

Izvorni jezik
Engleski

Znanstvena područja
Veterinarska medicina, Poljoprivreda (agronomija), Biotehnologija

Napomena
Topical issue on Crayfish.



POVEZANOST RADA


Projekti:
098-1782739-2749 - Substanična biokemijska i filogenetska raznolikost tkiva riba, rakova i školjaka (Čož-Rakovac, Rozelinda, MZOS ) ( POIROT)
119-0982934-3110 - UČINAK ONEČIŠĆENJA NA GENETIČKU STRUKTURU ORGANIZAMA U VODENOM OKOLIŠU (Klobučar, Goran, MZOS ) ( POIROT)

Ustanove:
Institut "Ruđer Bošković", Zagreb,
Prirodoslovno-matematički fakultet, Zagreb

Citiraj ovu publikaciju

Topić Popović, Natalija; Sauerborn Klobučar, Roberta; Maguire, Ivana; Strunjak-Perović, Ivančica; Kazazić, Snježana; Barišić, Josip; Jadan, Margita; Klobučar, Goran Igor Vinko; Čož-Rakovac, Rozelinda
High-throughput discrimination of bacteria isolated from Astacus astacus and A. leptodactylus // Knowledge and Management of Aquatic Ecosystems, (2014), 413; 04-1 doi:10.1051/kmae/2014005 (međunarodna recenzija, članak, znanstveni)
Topić Popović, N., Sauerborn Klobučar, R., Maguire, I., Strunjak-Perović, I., Kazazić, S., Barišić, J., Jadan, M., Klobučar, G. & Čož-Rakovac, R. (2014) High-throughput discrimination of bacteria isolated from Astacus astacus and A. leptodactylus. Knowledge and Management of Aquatic Ecosystems, (413), 04-1 doi:10.1051/kmae/2014005.
@article{article, year = {2014}, pages = {04-1-04-12}, DOI = {10.1051/kmae/2014005}, keywords = {crayfish, bacteria, MALDI-TOF MS, API 20E}, journal = {Knowledge and Management of Aquatic Ecosystems}, doi = {10.1051/kmae/2014005}, number = {413}, issn = {1961-9502}, title = {High-throughput discrimination of bacteria isolated from Astacus astacus and A. leptodactylus}, keyword = {crayfish, bacteria, MALDI-TOF MS, API 20E} }
@article{article, year = {2014}, pages = {04-1-04-12}, DOI = {10.1051/kmae/2014005}, keywords = {crayfish, bacteria, MALDI-TOF MS, API 20E}, journal = {Knowledge and Management of Aquatic Ecosystems}, doi = {10.1051/kmae/2014005}, number = {413}, issn = {1961-9502}, title = {High-throughput discrimination of bacteria isolated from Astacus astacus and A. leptodactylus}, keyword = {crayfish, bacteria, MALDI-TOF MS, API 20E} }

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus


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