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Ispitivanje oblika dvolančanih uzvojnica DNA/RNA pomoću nekovalentnih interakcija malih organskih markera


Piantanida, Ivo
Ispitivanje oblika dvolančanih uzvojnica DNA/RNA pomoću nekovalentnih interakcija malih organskih markera // Knjiga sažetaka 23. HRVATSKI SKUP KEMIČARA I KEMIJSKIH INŽENJERA / Hadžiev, Andrea ; Blažeković, Zdenko (ur.).
Zagreb: HDKI/Kemija u industriji, 2013. str. 5-5 (plenarno, nije recenziran, sažetak, znanstveni)


Naslov
Ispitivanje oblika dvolančanih uzvojnica DNA/RNA pomoću nekovalentnih interakcija malih organskih markera
(Sensing the Shape of the ds-DNA/RNA Structures by Non-Covalent Interactions)

Autori
Piantanida, Ivo

Vrsta, podvrsta i kategorija rada
Sažeci sa skupova, sažetak, znanstveni

Izvornik
Knjiga sažetaka 23. HRVATSKI SKUP KEMIČARA I KEMIJSKIH INŽENJERA / Hadžiev, Andrea ; Blažeković, Zdenko - Zagreb : HDKI/Kemija u industriji, 2013, 5-5

ISBN
978-953-6894-50-5

Skup
23. HRVATSKI SKUP KEMIČARA I KEMIJSKIH INŽENJERA

Mjesto i datum
Osijek, 21. – 24. 04. 2013

Vrsta sudjelovanja
Plenarno

Vrsta recenzije
Nije recenziran

Ključne riječi
Prepoznavanje DNA/RNA; male molekule; supramolekularna kemija
(DNA/RNA recognition; small molecules; supramolecular chemistry)

Sažetak
Small molecules targeting DNA and RNA have attracted significant scientific interest not only because of their biomedicinal applications, but also due to widespread use of spectrophotometric markers in the related scientific research – for instance, fluorescent techniques significantly developed during the last two decades and now represent about 60% of the detection enabling technologies used in molecular biology and medicine. Small molecules targeting double stranded (ds)-DNA/RNA often rely on the one dominant non-covalent binding mode for their interaction (e.g., intercalation, minor or major groove binding, external electrostatic binding). However, the combinations of different binding modes as well as additional steric and structural features controlling three-dimensional recognition were intensively explored within the last decades. Our research was particularly focused on the small molecules binding via non-covalent interactions (logKs > 5 M-1) to the most of naturally occurring ds-DNA and ds-RNA secondary structures and yielding different signals for each of the most common secondary structures (e.g. A-DNA/RNA, B-DNA, subtypes of DNA characterized by narrower minor groove, etc.) by sensitive and biologically applicable methods (UV/Vis, CD, fluorescence). The development of such single-molecule sensors, able to report simultaneously the presence of several different secondary structures of ds-DNA and ds-RNA species by different spectroscopic signals could replace the necessary application of several dyes, each one specific for one ds-DNA or ds-RNA target. Obtained results point out that the such multipurpose signalling selectivity can be achieved by fine tuning of small molecule structure (steric and DNA/RNA-binding/repulsion contacts) in respect to the slightly different binding sites of various ds-polynucleotides.

Izvorni jezik
Engleski

Znanstvena područja
Kemija



POVEZANOST RADA


Projekt / tema
098-0982914-2918 - Dizajn, sinteza i ispitivanje interakcija malih molekula s DNA, RNA i proteinima (Ivo Piantanida, )

Ustanove
Institut "Ruđer Bošković", Zagreb

Autor s matičnim brojem:
Ivo Piantanida, (202026)