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Kinetics of H/D Exchange by Mass Spectrometry. I. Analysis of a Single Exchange Profile


Babić, Darko; Kazazić, Saša; Smith, David Matthew
Kinetics of H/D Exchange by Mass Spectrometry. I. Analysis of a Single Exchange Profile // MATCH : communications in mathematical and in computer chemistry, 70 (2013), 3; 801-827 (međunarodna recenzija, članak, znanstveni)


Naslov
Kinetics of H/D Exchange by Mass Spectrometry. I. Analysis of a Single Exchange Profile

Autori
Babić, Darko ; Kazazić, Saša ; Smith, David Matthew

Izvornik
MATCH : communications in mathematical and in computer chemistry (0340-6253) 70 (2013), 3; 801-827

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
H/D exchange ; mass spectrometry ; exchange profile

Sažetak
An exchange profile is a sequence of fragment fractions with 0, 1, ..., n deuterons introduced by hydrogen/deuterium exchange into a given molecular fragment. Derivation of the site exchange probabilities p1, p2, ..., pn, responsible for the experimentally observed exchange profile, is analyzed. A relation is established between p1, p2, ..., pn and the zeros of the polynomial whose coefficients are equal to the fractions in the exchange profile. When the zeros are complex, the probabilities are usually determined by the least squares fitting or by the maximum likelihood estimation. It is proved that in such cases the calculated probabilities can not be all distinct. Analytical expressions for the gradient and the Hessian of a sum of squared deviations between theoretical and experimental values are given. A case with only two exchanging sites (n=2) is examined in detail. Numerical simulations were performed to estimate the incidence of complex polynomial zeros for n=3-10 with varied number of detected fragment ions N=1000-1000000.

Izvorni jezik
Engleski

Znanstvena područja
Matematika, Kemija



POVEZANOST RADA


Projekt / tema
098-0982915-2942 - Razvoj matematičkih metoda za opis strukture, dinamike i reaktivnosti molekula (Darko Babić, )
098-0982915-2945 - Spektroskopija, kemijska svojstva i reakcije biološki aktivnih molekula (Branka Kovač, )
098-0982933-2937 - Računalno proučavanje strukture i funkcije proteina (David Matthew Smith, )

Ustanove
Institut "Ruđer Bošković", Zagreb

Časopis indeksira:


  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus


Uključenost u ostale bibliografske baze podataka:


  • MathSciNet