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Study of interactions between DNA/RNA nucleotides and PHENPOD by surface enhanced Raman spectroscopy


Dijanošić, Adriana; Miljanić, Snežana; Gonzales Garcia, Jorge; Garcia-Espana Enrique; Piantanida, Ivo
Study of interactions between DNA/RNA nucleotides and PHENPOD by surface enhanced Raman spectroscopy // EUCMOS 2012 Book of Abstracts / Nagy-Pora, Katalin ; Chis, Vasile ; Astilean, Simion ; Cozar, Onuc (ur.).
Cluj-Napoca: Napoca Star, 2012. str. 176-176 (poster, međunarodna recenzija, sažetak, znanstveni)


Naslov
Study of interactions between DNA/RNA nucleotides and PHENPOD by surface enhanced Raman spectroscopy

Autori
Dijanošić, Adriana ; Miljanić, Snežana ; Gonzales Garcia, Jorge ; Garcia-Espana Enrique ; Piantanida, Ivo

Vrsta, podvrsta i kategorija rada
Sažeci sa skupova, sažetak, znanstveni

Izvornik
EUCMOS 2012 Book of Abstracts / Nagy-Pora, Katalin ; Chis, Vasile ; Astilean, Simion ; Cozar, Onuc - Cluj-Napoca : Napoca Star, 2012, 176-176

ISBN
978-973-647-912-0

Skup
31st European Congress on Molecular Spectroscopy

Mjesto i datum
Cluj-Napoca, Rumunjska, 26-31.08.2012

Vrsta sudjelovanja
Poster

Vrsta recenzije
Međunarodna recenzija

Ključne riječi
Surface-enhanced Raman spectroscopy; nucleotides; intercalation; groove binding

Sažetak
PHENPOD is a multifunctional molecule consisted of 1, 10-phenanthroline as linkage for two aza-crowns containing pyridine. Surface-enhanced Raman scattering (SERS) was used to study interactions between PHENPOD and DNA/RNA mononucleotides (AMP, GMP, CMP, UMP), single-stranded RNA polynucleotides (poly A, poly G, poly C, poly U) and double-stranded DNA/RNA polynucleotides (poly dAdT-poly dAdT, poly dGdC-poly dGdC, poly rA-poly rU). New bands observed in the SERS spectra of PHENPOD with mononucleotides and single-stranded polynucleotides originated mainly from nucleic bases, indicating interactions between the PHENPOD molecules and the nucleotides. However, mixtures of PHENPOD and nucleotides containing guanine produced very weak bands arising from vibrational modes of the purine base, if compared to the spectra of the polyamine molecules with other nucleobases. SERS measurements with double-stranded polynucleotides indicated selective binding of the PHENPOD molecules with the DNA polynucleotides. Adding poly dAdT-poly dAdT into the PHENPOD solution, an intensity of the polyamine bands decreased and new bands appeared, belonging to adenine stretching modes. It can be assumed that the PHENPOD molecules interacted with the minor and major groove of the adenine-thymine polynucleotide, while the phenanthroline moiety intercalated between the base pairs. On the other hand, in the spectra of mixtures of PHENPOD with poly dGdC-poly dGdC new bands were not obtained, and the intensity of the polyamine bands slightly increased, implying the lack of interactions between the polyamine molecules and the guanine-cytosine polynucleotide. In the spectrum of the PHENPOD molecules with the double-stranded RNA polynucleotide no significant changes were observed, as well.

Izvorni jezik
Engleski

Znanstvena područja
Kemija



POVEZANOST RADA


Projekt / tema
098-0982914-2918 - Dizajn, sinteza i ispitivanje interakcija malih molekula s DNA, RNA i proteinima (Ivo Piantanida, )
119-1191342-2959 - Spektroskopska analiza nezasićenih sustava i spojeva metala (Snežana Miljanić, )

Ustanove
Institut "Ruđer Bošković", Zagreb,
Prirodoslovno-matematički fakultet, Zagreb