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Pregled bibliografske jedinice broj: 488194

Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans


Harcet, Matija; Roller, Maša; Ćetković, Helena; Perina, Dragutin; Wiens, Matthias; Müller, Werner E.G.; Vlahoviček, Kristian
Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans // Molecular biology and evolution, 27 (2010), 12; 2747-2756 doi:10.1093/molbev/msq174 (međunarodna recenzija, članak, znanstveni)


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Naslov
Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans

Autori
Harcet, Matija ; Roller, Maša ; Ćetković, Helena ; Perina, Dragutin ; Wiens, Matthias ; Müller, Werner E.G. ; Vlahoviček, Kristian

Izvornik
Molecular biology and evolution (0737-4038) 27 (2010), 12; 2747-2756

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
metazoan evolution; comparative genomics; genome complexity; Suberites domuncula; Lubomirskia baicalensis

Sažetak
Sponges (Porifera) are among the simplest living and the earliest branching metazoans. They hold a pivotal role for studying genome evolution of the entire metazoan branch, both as an outgroup to Eumetazoa and as the closest branching phylum to the common ancestor of all multicellular animals (Urmetazoa). In order to assess the transcription inventory of sponges, we sequenced EST libraries of two demosponge species, S. domuncula and L. baicalensis and systematically analyzed the assembled sponge transcripts against their homologs from complete proteomes of six well characterized metazoans – Nematostella vectensis, Caenorhabditis elegans, Drosophila melanogaster, Strongylocentrosus purpuratus, Ciona intestinalis and Homo sapiens. We show that even the earliest metazoan species already have strikingly complex genomes in terms of gene content and functional repertoire, and that the rich gene repertoire existed even before the emergence of true tissues therefore further emphasizing the importance of gene loss and spatio-temporal changes in regulation of gene expression in shaping the metazoan genomes. Our findings further indicate that sponge and human genes generally show similarity levels higher than expected from their respective positions in metazoan phylogeny, providing direct evidence for slow rate of evolution in both basal and apical metazoan genome lineages. We propose that the ancestor of all metazoans had already had an unusually complex genome, thereby shifting the origins of genome complexity from Urbilateria to Urmetazoa.

Izvorni jezik
Engleski

Znanstvena područja
Biologija



POVEZANOST RADA


Projekt / tema
098-0982913-2874 - Geni i genomi: struktura, funkcija i evolucija (Helena Ćetković, )
119-0982913-1211 - Računalna genomika mikrobnih okoliša i bioinformatika ekstremofila (Kristian Vlahoviček, )

Ustanove
Institut "Ruđer Bošković", Zagreb,
Prirodoslovno-matematički fakultet, Zagreb

Citiraj ovu publikaciju

Harcet, Matija; Roller, Maša; Ćetković, Helena; Perina, Dragutin; Wiens, Matthias; Müller, Werner E.G.; Vlahoviček, Kristian
Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans // Molecular biology and evolution, 27 (2010), 12; 2747-2756 doi:10.1093/molbev/msq174 (međunarodna recenzija, članak, znanstveni)
Harcet, M., Roller, M., Ćetković, H., Perina, D., Wiens, M., Müller, W. & Vlahoviček, K. (2010) Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans. Molecular biology and evolution, 27 (12), 2747-2756 doi:10.1093/molbev/msq174.
@article{article, year = {2010}, pages = {2747-2756}, DOI = {10.1093/molbev/msq174}, keywords = {metazoan evolution, comparative genomics, genome complexity, Suberites domuncula, Lubomirskia baicalensis}, journal = {Molecular biology and evolution}, doi = {10.1093/molbev/msq174}, volume = {27}, number = {12}, issn = {0737-4038}, title = {Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans}, keyword = {metazoan evolution, comparative genomics, genome complexity, Suberites domuncula, Lubomirskia baicalensis} }

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


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