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Surface-Enhanced Raman Study of the Interactions between Tripodal Cationic Polyamines and Polynucleotides


Miljanić, Snežana; Dijanošić, Adriana; Piantanida, Ivo; Meić, Zlatko; Albelda, M. Teresa; Sornosa-Ten, Alejandra; García-Espana, Enrique
Surface-Enhanced Raman Study of the Interactions between Tripodal Cationic Polyamines and Polynucleotides // Analyst, 136 (2011), 3185-3193 doi:10.1039/C0AN01035A (međunarodna recenzija, članak, znanstveni)


Naslov
Surface-Enhanced Raman Study of the Interactions between Tripodal Cationic Polyamines and Polynucleotides

Autori
Miljanić, Snežana ; Dijanošić, Adriana ; Piantanida, Ivo ; Meić, Zlatko ; Albelda, M. Teresa ; Sornosa-Ten, Alejandra ; García-Espana, Enrique

Izvornik
Analyst (0003-2654) 136 (2011); 3185-3193

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
Surface-enhanced Raman spectroscopy; polyamines; polynucleotides; DNA

Sažetak
Raman and surface-enhanced Raman spectra of new DNA/RNA-binding compounds consisting of three imidazole (Im) and three pyridine (Py) rings connected by tripodal polyaminomethylene linkages were obtained by the near-infrared excitation at 1064 nm. Study of interactions of Im and Py polyamines with single-stranded RNA polynucleotides (poly A, poly G, poly C, poly U), double-stranded DNA polynucleotides (poly dAdT–poly dAdT, poly dGdC–poly dGdC) and calf thymus DNA (ct-DNA) by surface-enhanced Raman spectroscopy (SERS) reveals unambiguous enhancement of the Raman scattering from the small molecules as well as appearance of new bands in spectra associated mainly with nucleobases. The SERS experiments point toward comparable interactions of Im and Py polyamines with single-stranded purine and pyrimidine polynucleotides. Furthermore, SERS experiments with double stranded polynucleotides reveal the basepair dependent selectivity of Im and Py, whereby interactions within both, major and minor groove are indicated for poly dAdT–poly dAdT, at variance to preferred binding of Im and Py to only major groove of poly dGdC–poly dGdC. SERS spectra of Im and Py with ct-DNA imply that protonated amino groups of these compounds preferentially interact with N7 atoms (adenine, guanine) while nitrogen in aromatic rings of polyamines might be attracted to C6–NH2 (adenine), all sites being located at the major groove of the DNA helix. Wavenumber downshift of the imidazole (Im) and pyridine (Py) ring vibrations supports aromatic stacking interactions of imidazole and pyridine aromatic moieties with DNA basepairs.

Izvorni jezik
Engleski

Znanstvena područja
Kemija



POVEZANOST RADA


Projekt / tema
098-0982914-2918 - Dizajn, sinteza i ispitivanje interakcija malih molekula s DNA, RNA i proteinima (Ivo Piantanida, )
119-1191342-2959 - Spektroskopska analiza nezasićenih sustava i spojeva metala (Snežana Miljanić, )

Ustanove
Institut "Ruđer Bošković", Zagreb,
Prirodoslovno-matematički fakultet, Zagreb

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • MEDLINE


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