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Long-term conservation vs. high sequence divergence : the case of an extraordinarily old satellite DNA in bivalve mollusks


Plohl, Miroslav; Petrović, Vlatka; Luchetti, Andrea; Ricci, Andrea; Šatović, Eva; Passamonti, Marco; Mantovani, Barbara
Long-term conservation vs. high sequence divergence : the case of an extraordinarily old satellite DNA in bivalve mollusks // Heredity (Edinburgh), 104 (2010), 6; 543-551 doi:10.1038/hdy.2009.141 (međunarodna recenzija, članak, znanstveni)


Naslov
Long-term conservation vs. high sequence divergence : the case of an extraordinarily old satellite DNA in bivalve mollusks

Autori
Plohl, Miroslav ; Petrović, Vlatka ; Luchetti, Andrea ; Ricci, Andrea ; Šatović, Eva ; Passamonti, Marco ; Mantovani, Barbara

Izvornik
Heredity (Edinburgh) (0018-067X) 104 (2010), 6; 543-551

Vrsta, podvrsta i kategorija rada
Radovi u časopisima, članak, znanstveni

Ključne riječi
Bivalvia ; concerted evolution ; conserved/variable boxes ; library model ; satellite DNA

Sažetak
The ubiquity of satellite DNA (satDNA) sequences has raised much controversy over the abundance of divergent monomer variants and the long-time nucleotide sequence stability observed for many satDNA families. In this work, we describe the satDNA BIV160, characterized in nine species of the three main bivalve clades (Protobranchia, Pteriomorphia and Heteroconchia). BIV160 monomers are similar in repeat size and nucleotide sequence to satDNAs described previously in oysters and in the clam Donax trunculus. The broad distribution of BIV160 satDNA indicates that similar variants existed in the ancestral bivalve species that lived about 540 Myr ago ; this makes BIV160 the most ancient satDNA described so far. In the species examined, monomer variants are distributed in quite a complex pattern. This pattern includes i) species characterized by a specific group of variants, ii) species that share distinct group(s) of variants, and iii) species with both specific and shared types. The evolutionary scenario suggested by these data reconciles sequence uniformity in homogenization-maintained satDNA arrays with the genomic richness of divergent monomer variants formed by diversification of the same ancestral satDNA sequence. Diversified repeats can continue to evolve in a non-concerted manner, and behave as independent amplification-contraction units in the framework of a “ library of satDNA variants” representing a permanent source of monomers that can be amplified into novel homogeneous satDNA arrays. On the whole, diversification of satDNA monomers and copy number fluctuations provide a highly dynamic genomic environment able to form and displace satDNA sequence variants rapidly in evolution.

Izvorni jezik
Engleski

Znanstvena područja
Biologija



POVEZANOST RADA


Projekt / tema
098-0982913-2756 - Evolucija, osobitosti i funkcionalne interakcije sekvenci satelitnih DNA (Miroslav Plohl, )

Ustanove
Institut "Ruđer Bošković", Zagreb

Časopis indeksira:


  • Current Contents Connect (CCC)
  • Web of Science Core Collection (WoSCC)
    • Science Citation Index Expanded (SCI-EXP)
    • SCI-EXP, SSCI i/ili A&HCI
  • Scopus
  • MEDLINE


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